Gene detail

Detail information of GWHGAAEX013879/evm.TU.scaffold_54.86

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|672186586\|ref\|XP_008813119.1\|	PREDICTED: BTB/POZ domain-containing protein At3g44820 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q9FYC8\|Y3482_ARATH	BTB/POZ domain-containing protein At3g44820
trEMBL	tr\|A0A059AA74\|A0A059AA74_EUCGR	Uncharacterized protein {ECO:0000313\|EMBL:KCW50743.1}
TAIR	AT3G44820	Phototropic-responsive NPH3 family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000059	2398014	2456679	+

Transcript Sequence
>GWHTAAEX013879 GTATGCTCATTCTTTTCCATCCACGGCCGGCTTCTCAGAGTCCGCTTTAAGCCTCTTATTTTCCATCTACTGCTGAGTAATAGTCAGTAAAAATACATGGCAATCACTATCACGAAGGGTTTAAAAAACGCTGGAGCACTCACCGCCGGCCACCATTCTTCTATAGCCATTATCATTGGCCGGCAAGTCGAGAGGCTGGACAGCTGTTGTCTTCTTCTTGCTGCTTTTATGCTTTTTCCTATTCTGAATTCCAAGTCAGATCGGTCCCTCCCGGGCCATCTTCATTCGTGCGGAAGGAAAGTCAAACTGGAGTTTGTGATCGCCCCTTCTTCTTCTTCTTCTTCTTCTTCACCACTATTCTGTTATCGTCTTCACCGCGGCTTTTATTTGCTTTCCAAAAATCGTTGCGGCTGTATGTGGAAGGATTTTCTTGAAAGCTTCAAAAGGATCAAACCTTTTCATTTTTGTATACAGAATTTCGTTTCTTTACTGCTTCTGAGCGGGCATGAGGACTGCGATTGTGGCAGATGACGGAGGTGGCAGGGCCAGGCGCTTGTATCGCAGGGGAAATGAGTGGTTTTGTAGTTCTAGTCTTCAAAGTGATATCGCTATTGAAGTTGAGGAAACCCTTTTTCATCTTCACAAGTTTCCTCTTATTTCAAAATGTGGGAAGATTGCACGCATAGTCAACTGTTCGTTAGATTCAAAAGATGGAGTTCATACATTATTGGAATGTCCTGGAGGGTCAAATTGGTTCTTGATTGCTGCTAGATTTTGCTATGAGGGCAAAGTGGAGCTTAAGCCTGAAAACATTTTGATGGTGCATTTGCTTGCTGATTTTCTTGAAATGACAGAGGAATACAGTGAAGATAATTTGTTGATGCTGGCAGAACGTTTTATTCATAAAGTAATCCTTCGGAACTGGAATGACTGTATGTCCGCTCTTCAGAGCTTTCAGGATTGTATTTTAGAAGCTGAAAATTATCCAATTGTGCAGAAGTGTCTTAATGCTGTGGCACTAATGGCATGCCGGGATCCTAGTTTTGCTGGCAATATGTATGGAAGCTTACATAGTCCTGGTGGAAGTATTCTCTGGAATGGAATAGACACTGGAGCCAGAGTTAGAAACACTTCATCTGATTGGTGGTTTGAAGATGTTTCCCATCTCTCTTTTCCAATATTCAAGAAATTTATTGAAACAATCAACAACCGTGGCATCAGATCACTAAATTTAGCTGATGTACTGATGTTCTTTGCTACAAAGCATTTGCCTGGTCTTGGTAGGTGGCAGAACCAGCAAGGTAGAAGGAAAATCAGAAGTTTATCAATTGATTCAGAAGTCGTTCATCAAAAAGTTTTACTTAAAAGCATTGTAGAGCTTTTTCCAGAAAAAAAGGGAAAATCTTTTTGCCGCTTCTTGTTGGGACTTTTACGTCTAGCAACAATACTAGATGTTGACCAGTCATGTAAGGAGTCTTTGGAGAGGAAAATAGGGATGCAGTTTGAACTGGTGACACTGGATAGTATCTTGATTCCTAATTTTTCAGGCTCAGATAATTTATATGATACTGATTGTATTGAACGCATTATTCGACATTTCTTGTCTTTTCAGTCCCTGAAAATTGTACCAGTTTCAGCACTATCATCTAATCCTACTATTCAGTTGTCCTCCGGTATTTCAGAAAAGGCATCAAAGGTTGTCGATGATTATATTGCTGAAGTTGCCCCTGACATAAACTTGAAGCCGCAGAAAATGCAGTCCATTCTAGAGGTTTTCCCAGATTACTTACGCAAATTGGATGATGGAATTTATCGAGCACTTGATATATATTTTAAGGAGCATCCGCAGCTTCGAGAAGACGAGAGGGAGCAGCTCTGCCGCGCCATAAATTTCGGCAAGCTTTCGGCGGATGCGTGCATCCACGCGTCGCAGAACGAGAGCCTTCCGCTCAGGTACGTCCTCCAGGTTCTGTTCTTCGAGCAGCGGCAGCTCCGCTCCGCCCTCTCCAGATTGAACCTGGTTGACGCCGCCGGCAACTTAAATAATGCGGCCGCAGCTTCCGACGAAATTTCCGGCGAGTTTATTCTGGACAGAGGAGGATGGGTTTCTGTTTCTCGAGGGAACCAGGACCTCAAAGACGACATGGAACAGATACAGTCTAAGGTCGCCCAACTGGAGGGTCAGTTTTTGAGCTTGAAGAAAGTAATGCGAAGTCTCTCCAGGCGCAGTCTCTCCAGGTAACGCTCTTACCTTTCCCTCCTGTAGTTCTATACATAACACCAACTTATTCTTTATTTTACATATTTATCGTAATTTTATTAAATATTACATAAAAACCACAGATTAAAAAAAAAAAAAAAACCATATTTAAACCCAAACTCTCCATCACCGTCGGGTGCTCAATCCCGAGCTCGACTGCCTTAGCAGTTTGAGTTTAAAAATAGTTTTTTGGTAATATTTAAAAAAAATGGTGTTAAATGTGTATAATAGGAATACGTTTATGTTATGGGTGTAAAAATCTCTTGGGATACTTACTTGCATGACACCCGAGTGCTTAATATTTACATATCTAACACTTGATCATAGAAATCTATTCATTTGATAAATGGAGTGATAATATCAGTGTAATAATAAGTATTCATATGGTAATTTTGTAAATTATAAATAAGAAAGATTCGAGTGGCAAGCTTGAAGTTCTCATATATATATATATATATCACGTAGTTGTGCGATGGCCATAACATGTGCTAAATAAAACATTTTATTGAATGTAATTTTTGAATAAATTATGAAAACATTTTCGCTGATATTCG

Network for GWHGAAEX013879

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03000.13	NPH3	212	471	1.50E-74

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	31.500
SRP064423	SRR2545915	Juvenile tuber	14.850
SRP108465	SRR5643513	five period of Gastrodia elata	19.130
	SRR5643514	five period of Gastrodia elata	21.530
	SRR5643515	five period of Gastrodia elata	18.290
	SRR5643524	five period of Gastrodia elata	19.550
	SRR5643525	five period of Gastrodia elata	26.460
	SRR5643528	five period of Gastrodia elata	36.840
	SRR5643658	five period of Gastrodia elata	37.480
	SRR5643659	five period of Gastrodia elata	10.610
	SRR5643660	five period of Gastrodia elata	11.000
	SRR5643661	five period of Gastrodia elata	10.160
	SRR5643662	five period of Gastrodia elata	11.890
	SRR5643663	five period of Gastrodia elata	11.170
	SRR5643664	five period of Gastrodia elata	11.880
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	20.610
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	21.250
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	24.750
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	20.860
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	25.240
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	26.060
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	21.710
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	19.820
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	25.460
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	30.270
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	31.240
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	31.240
SRP279888	Gastro	Gastrodia elata tuber	14.62
	Juven	Juvenile tuber	11.01
	Mother_Gastro	Mother tuber of Gastrodia elata	28.85
	Mother_Juven	Mother tuber of Juvenile	16.60