Detail information of GWHGAAEX013881/evm.TU.scaffold_54.88
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|302344605|ref|YP_003809134.1| | 0 | acetate/CoA ligase [Desulfarculus baarsii DSM 2075] |
| KOG | KOG1175 | 0 | Acyl-CoA synthetase |
| nr | gi|743812860|ref|XP_010929547.1| | 0 | PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal-like isoform X2 [Elaeis guineensis] |
| Swissprot | tr|B9DGD6|ACS_ARATH | 0 | Acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal (Precursor) |
| trEMBL | tr|M0RHL7|M0RHL7_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P12410_001} |
| TAIR | AT5G36880 | 0 | acetyl-CoA synthetase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000059 | 2494428 | 2540956 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013881
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF16177.4 | ACAS_N | 57 | 117 | 2.30E-20 |
| PF00501.27 | AMP-binding | 124 | 565 | 3.40E-95 |
| PF13193.5 | AMP-binding_C | 574 | 652 | 4.10E-23 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0019427 | Biological Process | acetyl-CoA biosynthetic process from acetate |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0016208 | Molecular Function | AMP binding |
| GO:0003987 | Molecular Function | acetate-CoA ligase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 26.740 |
| SRR2545915 | Juvenile tuber | 32.030 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 64.010 |
| SRR5643514 | five period of Gastrodia elata | 23.390 | |
| SRR5643515 | five period of Gastrodia elata | 31.780 | |
| SRR5643524 | five period of Gastrodia elata | 28.110 | |
| SRR5643525 | five period of Gastrodia elata | 65.450 | |
| SRR5643528 | five period of Gastrodia elata | 59.150 | |
| SRR5643658 | five period of Gastrodia elata | 68.530 | |
| SRR5643659 | five period of Gastrodia elata | 31.410 | |
| SRR5643660 | five period of Gastrodia elata | 32.820 | |
| SRR5643661 | five period of Gastrodia elata | 32.010 | |
| SRR5643662 | five period of Gastrodia elata | 34.640 | |
| SRR5643663 | five period of Gastrodia elata | 37.240 | |
| SRR5643664 | five period of Gastrodia elata | 39.140 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 39.880 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 30.790 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 41.700 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 38.580 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 47.300 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 46.930 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 37.100 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 49.300 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 39.250 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 38.070 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 44.790 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 44.790 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 41.24 |
| Juven | Juvenile tuber | 34.66 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 103.68 | |
| Mother_Juven | Mother tuber of Juvenile | 79.26 |