Detail information of GWHGAAEX013889/evm.TU.scaffold_54.95
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|116622785|ref|YP_824941.1| | 9.00E-60 | FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Candidatus Solibacter usitatus Ellin6076] |
| KOG | KOG1336 | 0 | Monodehydroascorbate/ferredoxin reductase |
| nr | gi|212896914|gb|ACJ38541.1| | 0 | monodehydroascorbate reductase [Oncidium hybrid cultivar] |
| Swissprot | tr|Q43497|MDAR_SOLLC | 0 | Monodehydroascorbate reductase |
| trEMBL | tr|B8XF12|B8XF12_ONCHC | 0 | Monodehydroascorbate reductase {ECO:0000313|EMBL:ACJ38541.1} |
| TAIR | AT3G52880 | 0 | monodehydroascorbate reductase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000059 | 2610093 | 2636829 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013889
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07992.13 | Pyr_redox_2 | 7 | 321 | 4.40E-57 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08232 | E1.6.5.4 | Metabolic pathways | map01100 |
| Ascorbate and aldarate metabolism | map00053 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0050660 | Molecular Function | flavin adenine dinucleotide binding |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1562.410 |
| SRR2545915 | Juvenile tuber | 853.090 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 471.820 |
| SRR5643514 | five period of Gastrodia elata | 424.980 | |
| SRR5643515 | five period of Gastrodia elata | 466.900 | |
| SRR5643524 | five period of Gastrodia elata | 531.510 | |
| SRR5643525 | five period of Gastrodia elata | 435.220 | |
| SRR5643528 | five period of Gastrodia elata | 952.400 | |
| SRR5643658 | five period of Gastrodia elata | 437.390 | |
| SRR5643659 | five period of Gastrodia elata | 545.040 | |
| SRR5643660 | five period of Gastrodia elata | 598.760 | |
| SRR5643661 | five period of Gastrodia elata | 565.070 | |
| SRR5643662 | five period of Gastrodia elata | 552.380 | |
| SRR5643663 | five period of Gastrodia elata | 616.640 | |
| SRR5643664 | five period of Gastrodia elata | 675.650 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 422.980 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 436.100 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 445.070 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 439.130 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 501.480 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 536.640 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 409.630 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 462.640 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 443.500 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 455.240 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 501.670 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 501.670 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 484.77 |
| Juven | Juvenile tuber | 541.65 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 920.67 | |
| Mother_Juven | Mother tuber of Juvenile | 1,021.91 |