Detail information of GWHGAAEX013890/evm.TU.scaffold_54.96


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG13471.00E-74Uncharacterized membrane protein, predicted efflux pump
nrgi|672121389|ref|XP_008783995.1|0PREDICTED: proteinaceous RNase P 2 isoform X1 [Phoenix dactylifera]
Swissprottr|F4JKB6|PRRP3_ARATH1.00E-169Proteinaceous RNase P 3
trEMBLtr|I1LTU0|I1LTU0_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G30840.1}
TAIRAT2G166501.00E-74proteinaceous RNase P 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005926395202663455+
Transcript Sequence

Network for GWHGAAEX013890

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF17177.3PPR_long22161.30E-70
PF16953.4PRORP2574875.20E-67
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K18213PRORP RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms9.790
SRR2545915Juvenile tuber11.640
SRP108465SRR5643513five period of Gastrodia elata8.180
SRR5643514five period of Gastrodia elata7.130
SRR5643515five period of Gastrodia elata8.580
SRR5643524five period of Gastrodia elata7.270
SRR5643525five period of Gastrodia elata6.580
SRR5643528five period of Gastrodia elata15.060
SRR5643658five period of Gastrodia elata4.320
SRR5643659five period of Gastrodia elata9.710
SRR5643660five period of Gastrodia elata9.890
SRR5643661five period of Gastrodia elata10.160
SRR5643662five period of Gastrodia elata7.350
SRR5643663five period of Gastrodia elata8.300
SRR5643664five period of Gastrodia elata6.250
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_17.130
SRR6049655Rhizomagastrodiae_C368-T10_good_18.910
SRR6049656Rhizomagastrodiae_C368-T07_good_18.060
SRR6049657Rhizomagastrodiae_C368-T07_good_16.710
SRR6049658Rhizomagastrodiae_C368-T04_good_16.180
SRR6049659Rhizomagastrodiae_C368-T04_good_15.980
SRR6049660Rhizomagastrodiae_C368-T01_good_16.340
SRR6049661Rhizomagastrodiae_C368-T04_good_16.850
SRR6049662Rhizomagastrodiae_C368-T01_good_19.730
SRR6049663Rhizomagastrodiae_C368-T01_good_18.630
SRR6049664Rhizomagastrodiae_C368-T10_good_110.620
SRR6049665Rhizomagastrodiae_C368-T10_good_110.620
SRP279888GastroGastrodia elata tuber 11.39
JuvenJuvenile tuber15.86
Mother_GastroMother tuber of Gastrodia elata 11.59
Mother_JuvenMother tuber of Juvenile 19.83