Detail information of GWHGAAEX013892/evm.TU.scaffold_54.98
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|672108974|ref|XP_008787873.1| | 0 | PREDICTED: transcription factor TGA6-like isoform X2 [Phoenix dactylifera] |
| Swissprot | tr|O24160|TGA21_TOBAC | 5.00E-126 | TGACG-sequence-specific DNA-binding protein TGA-2.1 |
| trEMBL | tr|M0S5R8|M0S5R8_MUSAM | 9.00E-174 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P06770_001} |
| TAIR | AT1G08320_1 | 3.00E-138 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000059 | 2682157 | 2689958 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013892
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00170.20 | bZIP_1 | 145 | 186 | 1.10E-07 |
| PF14144.5 | DOG1 | 226 | 301 | 1.80E-30 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bZIP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14431 | TGA | Plant hormone signal transduction | map04075 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0006351 | Biological Process | transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 32.260 |
| SRR2545915 | Juvenile tuber | 11.200 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 60.790 |
| SRR5643514 | five period of Gastrodia elata | 36.010 | |
| SRR5643515 | five period of Gastrodia elata | 26.020 | |
| SRR5643524 | five period of Gastrodia elata | 29.020 | |
| SRR5643525 | five period of Gastrodia elata | 11.730 | |
| SRR5643528 | five period of Gastrodia elata | 8.750 | |
| SRR5643658 | five period of Gastrodia elata | 12.830 | |
| SRR5643659 | five period of Gastrodia elata | 5.130 | |
| SRR5643660 | five period of Gastrodia elata | 7.600 | |
| SRR5643661 | five period of Gastrodia elata | 5.580 | |
| SRR5643662 | five period of Gastrodia elata | 5.360 | |
| SRR5643663 | five period of Gastrodia elata | 2.880 | |
| SRR5643664 | five period of Gastrodia elata | 10.230 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 48.500 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 45.850 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 50.020 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 46.340 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 42.130 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 46.060 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 44.960 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 36.700 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 48.770 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 53.380 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 64.540 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 64.540 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 11.03 |
| Juven | Juvenile tuber | 52.54 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 44.82 | |
| Mother_Juven | Mother tuber of Juvenile | 39.97 |