Detail information of GWHGAAEX013893/evm.TU.scaffold_54.99
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 3.00E-166 | FOG: PPR repeat |
| nr | gi|743764171|ref|XP_010912290.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At2g22070-like [Elaeis guineensis] |
| Swissprot | tr|Q9SHZ8|PP168_ARATH | 1.00E-166 | Pentatricopeptide repeat-containing protein At2g22070 |
| trEMBL | tr|A5AR18|A5AR18_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CAN80331.1} |
| trEMBL | tr|A5AR18|A5AR18_VITVI | 2.00E-40 | Putative uncharacterized protein {ECO:0000313|EMBL:CAN80331.1} |
| TAIR | AT2G22070 | 3.00E-166 | pentatricopeptide (PPR) repeat-containing protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000059 | 2717073 | 2719570 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013893
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 71 | 97 | 0.042 |
| PF01535.19 | PPR | 99 | 128 | 0.038 |
| PF13041.5 | PPR_2 | 302 | 349 | 7.90E-11 |
| PF13041.5 | PPR_2 | 402 | 449 | 3.40E-12 |
| PF01535.19 | PPR | 477 | 502 | 0.0022 |
| PF14432.5 | DYW_deaminase | 577 | 701 | 3.20E-36 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.440 |
| SRR2545915 | Juvenile tuber | 0.210 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.060 |
| SRR5643514 | five period of Gastrodia elata | 0.670 | |
| SRR5643515 | five period of Gastrodia elata | 0.840 | |
| SRR5643524 | five period of Gastrodia elata | 0.640 | |
| SRR5643525 | five period of Gastrodia elata | 0.030 | |
| SRR5643528 | five period of Gastrodia elata | 0.130 | |
| SRR5643658 | five period of Gastrodia elata | 0.050 | |
| SRR5643659 | five period of Gastrodia elata | 1.740 | |
| SRR5643660 | five period of Gastrodia elata | 1.290 | |
| SRR5643661 | five period of Gastrodia elata | 2.420 | |
| SRR5643662 | five period of Gastrodia elata | 1.970 | |
| SRR5643663 | five period of Gastrodia elata | 1.380 | |
| SRR5643664 | five period of Gastrodia elata | 1.270 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.890 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.650 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.930 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.450 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.110 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.100 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.880 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.500 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.490 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.400 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.630 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.630 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.85 |
| Juven | Juvenile tuber | 0.54 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.45 | |
| Mother_Juven | Mother tuber of Juvenile | 0.08 |