Gene detail

Detail information of GWHGAAEX013896/evm.TU.scaffold_54.102

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|18314149\|ref\|NP_560816.1\|	6.00E-32	mannose-1-phosphate guanylyltransferase [Pyrobaculum aerophilum str. IM2]
KOG	KOG1460	0	GDP-mannose pyrophosphorylase
nr	gi\|743837933\|ref\|XP_010936551.1\|	0	PREDICTED: mannose-1-phosphate guanyltransferase alpha-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q6Z9A3\|GMPP3_ORYSJ	2.00E-56	Probable mannose-1-phosphate guanylyltransferase 3
trEMBL	tr\|A0A061FU19\|A0A061FU19_THECC	0	ADP-glucose pyrophosphorylase family protein isoform 1 {ECO:0000313\|EMBL:EOY20588.1}
TAIR	AT1G74910	0	ADP-glucose pyrophosphorylase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000059	2756698	2799933	+

Transcript Sequence
>GWHTAAEX013896 AATCAAAAGGATGACAGGAGAGACTTCCATCTCTAACTAAAACTTCAAAATATCCTTATATGAACGTTTATTTGATGTTAGATCTTGTCCTCGTGACTCACGTGAAACACTGGGCAGGCGTCCATGAAAGTCACTCTGATCCGGCTCTGTTCTTTTGTAAATCCTCTTATTCATCCCCGCTTCAATCTCCGAGCCATCAATTTGGCCTTTCAGTCGCGCGCAGATCTTGACAGCCTTTCCTGCGGTTGAGCTCAAGCACGTTGTGCATCTCTTCTTCTTTAGCTAAGGTTTGTTGCTTCGGATCAGAGCTATGGGAAGTTCAGATGAGAGGATTGTGGCTGTGATTATGGTCGGAGGCCCTACCAAAGGAACGCGGTTCCGGCCATTGTCTCTGAACGTTCCGAAGCCATTGTTTCCTCTTGCGGGGCAGCCGATGGTTCATCATCCGATATCTGCTTGTAGAAGAATTCCCAACTTGGCCCAAATTTATCTTATTGGGTTTTATGAGGAGCGGGAGTTTGCTCTTTATGTATCGGCTATTTCGAATGAGCTCAGAGTTCCTGTTAGGTATTTAAGAGAAGATAGGCCACGAGGATCAGCTGGAGGGCTGTATAGTTTTAGAGATTATATTATGGAAGAAAATCCGTCTCATATATTTTTGCTGAACTGTGATGTTTGCTGCAGCTTTCCACTGCCAGAAATGCTCGATGCTCATAAAAACTATGGTGGAATGGGGACAATACTAGTAATCAAGGTTTCTGCTGAATCAGCAAACCAATTTGGTGAATTAGTGGCTGATCCTATGACAAATGAGCTTTTACACTATACTGAGAAACCAGAGACTTTTGTTAGTGAACTCATAAATTGTGGTGTGTACATATTTACTCCAAATATATTTAAAGCTATTGTCGATTCTTTTAGTCATCGGAAGGATAGAGCAAATTTACAGCGGCTCGCTAGCTTTGATGCTCTACAATCAGCATCTAAAGCTCTTCCTGCAGATTATCTGAGGCTGGATCAGGATATTTTGTCTCCTCTTGCTGGGAAGAAAGAGCTCTACACATACGAAACCCGTGACTTCTGGGAGCAGATCAAGACGCCAGGGATGTCTTTGAAATGTTCAGGCTTGTATCTTGCTCAGTTTCATCATACATCCTCCCATCTTCTAGCCAGAAACAAGGGAAATAGAAGTGCTACCATAATTGATGATGTTTACATTCATCCATCAGCAAAAGTTCATCCAAGTGCCAAGATTGGCCCAAATGTCTCCATTTCTGCAAATGCACGGATAGCTGCTGGCGCAAGGCTCATCAGCTGCATTATTCTGGATGATGTTGAAGTTAAGGACAATGCTGTGGTTATACATTCCATTGTTGGTTGGAAATCATCCATTGGCAAGTGGTCGCGTGTGCAGGGCGAAGGAAATTACAATTCCAAACTCGGAATTACTATCCTCGGAGAGTCTGTGGCTGTGGAAGACGAAGTAGTGGTGATTAACAGCATTGTTCTCCCGAATAAGACCCTCAGTGTCAGTGTGCACGAAGAAATTATCCTCTGATCAAAATAAATACAAGGTTTTATTATTTTATTATTTAGCTTTATTTATGTGGTTGGTTGATCGGTTAATAAGGTTAATTTTTTGTTCGAAATTATTTCGGTGAAAAATAAAATATGTGGTCGAGAAATAAATTTATTTTTCTTAGGGATTTTTGTGCTGGATATTGAACTGAAGGCCAATAAAATGTGCATCATATTCTCTCAATTTTTATATTTATGGGATGTTTTAAGTTGTCATATGACAGCCAATGGAAAGGTCTTTCTGGTTGTATTAATTTAGTTTTTTCTTAATT

Network for GWHGAAEX013896

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00483.22	NTP_transferase	10	218	1.00E-29
PF00132.23	Hexapep	294	328	1.20E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00966	GMPP	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fructose and mannose metabolism	map00051
		Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0009058	Biological Process	biosynthetic process
GO:0016779	Molecular Function	nucleotidyltransferase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	32.410
SRP064423	SRR2545915	Juvenile tuber	44.300
SRP108465	SRR5643513	five period of Gastrodia elata	59.280
	SRR5643514	five period of Gastrodia elata	40.870
	SRR5643515	five period of Gastrodia elata	68.830
	SRR5643524	five period of Gastrodia elata	63.680
	SRR5643525	five period of Gastrodia elata	51.670
	SRR5643528	five period of Gastrodia elata	118.590
	SRR5643658	five period of Gastrodia elata	62.590
	SRR5643659	five period of Gastrodia elata	67.540
	SRR5643660	five period of Gastrodia elata	60.300
	SRR5643661	five period of Gastrodia elata	59.920
	SRR5643662	five period of Gastrodia elata	46.080
	SRR5643663	five period of Gastrodia elata	56.370
	SRR5643664	five period of Gastrodia elata	37.910
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	40.740
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	24.570
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	42.120
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	39.570
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	36.710
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	36.100
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	32.760
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	40.530
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	48.240
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	35.960
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	53.120
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	53.120
SRP279888	Gastro	Gastrodia elata tuber	41.37
	Juven	Juvenile tuber	24.23
	Mother_Gastro	Mother tuber of Gastrodia elata	85.42
	Mother_Juven	Mother tuber of Juvenile	80.79