Detail information of GWHGAAEX013897/evm.TU.scaffold_54.103_evm.TU.scaffold_54.104
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1142 | 6.00E-50 | Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) |
| nr | gi|743887169|ref|XP_010910326.1| | 2.55E-71 | PREDICTED: transcription initiation factor TFIID subunit 12 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q9SR71|TAF12_ARATH | 2.00E-50 | Transcription initiation factor TFIID subunit 12 |
| trEMBL | tr|A0A067L2R4|A0A067L2R4_JATCU | 8.00E-62 | Uncharacterized protein {ECO:0000313|EMBL:KDP42726.1} |
| TAIR | AT3G10070 | 6.00E-50 | TBP-associated factor 12 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000059 | 2801445 | 2842204 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013897
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03847.12 | TFIID_20kDa | 408 | 474 | 1.70E-27 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03126 | TAF12 | Basal transcription factors | map03022 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006352 | Biological Process | DNA-templated transcription, initiation |
| GO:0046982 | Molecular Function | protein heterodimerization activity |
| GO:0005669 | Cellular Component | transcription factor TFIID complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 18.630 |
| SRR2545915 | Juvenile tuber | 19.470 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 18.790 |
| SRR5643514 | five period of Gastrodia elata | 17.740 | |
| SRR5643515 | five period of Gastrodia elata | 19.490 | |
| SRR5643524 | five period of Gastrodia elata | 17.690 | |
| SRR5643525 | five period of Gastrodia elata | 20.620 | |
| SRR5643528 | five period of Gastrodia elata | 27.340 | |
| SRR5643658 | five period of Gastrodia elata | 26.690 | |
| SRR5643659 | five period of Gastrodia elata | 20.570 | |
| SRR5643660 | five period of Gastrodia elata | 19.860 | |
| SRR5643661 | five period of Gastrodia elata | 20.090 | |
| SRR5643662 | five period of Gastrodia elata | 23.570 | |
| SRR5643663 | five period of Gastrodia elata | 18.130 | |
| SRR5643664 | five period of Gastrodia elata | 17.410 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.310 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 26.340 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 16.830 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 15.000 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.130 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 15.400 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 15.500 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 16.660 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 19.420 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 17.680 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 19.600 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 19.600 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 29.27 |
| Juven | Juvenile tuber | 26.55 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 35.53 | |
| Mother_Juven | Mother tuber of Juvenile | 50.76 |