Gene detail

Detail information of GWHGAAEX013898/evm.TU.scaffold_54.105

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743833402\|ref\|XP_010935256.1\|	0	PREDICTED: APO protein 3, mitochondrial-like [Elaeis guineensis]
Swissprot	tr\|Q9FH50\|APO3_ARATH	1.00E-91	APO protein 3, mitochondrial (Precursor)
trEMBL	tr\|M0RXT4\|M0RXT4_MUSAM	1.00E-175	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P07260_001}
TAIR	AT5G61930	4.00E-91	Arabidopsis thaliana protein of unknown function (DUF794)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000059	2888422	2894747	+

Transcript Sequence
>GWHTAAEX013898 ATGGACGCTGTTGTAAATTTGCTGTTAATGGTCTTTGTTGCCCAAACAGTAAGAGGAATGCTTCGAAGGCATAATCAAATAATTATCAAGCACCATGGGAAATTTGTTGTGGATGTTGCTATTAACTATCTGAAAGGATTTACATTTTTTTTTTCAACTACTTCTGGAAGATTCATAGAGTATGCGAAGCAACCAAGAATTCGCCAAAGATCAGAGAGGAAACCATTGGTAACTAGCATCACTGAGCTCAAACGTAAGGCGAAAATGGAAAGGAAAATGAGGCAGGATGTTCGTGAGATCATTCTCCAACCGCCTGATAATGGACTTCTAGTCAAGGGATTGATTCTTGTTGCTCAAGAGGTCTATGATGCAAGGAAAAAGCTTTATGATTGTACCTCTTTGGTTCTAAAGAGTATAGGTGTTCATGTTTGCAGCAAATGTGAAGAAGTTTTCATTGGAAAGTTTCCACATCAAATACGCACATGCAATGTTGCTGGGAGTTTTCCAACCAACGACCACTCCTGGGTTCCAGGAACAACTGAGCATGTTCTTCCGGTGATAGATTCCTTCCATCTATATGATAGATTGGGCCGAGCAGTTTCTCATGAGGAAAGGCTTCAGGTTGATAGAATTCCTGCCATTTTGGAGCTGTGCGTGCAGGCAGGTGTGGACATTCCTGAGCATCCTACAAAACGTAGACTTTATCCTGTTTATAACGTTGCAGGAAAACTTATTGATTTTGAGCGTAAGTTTTCACGAGACTATTCATGTGGTAAAGACATTGAGCCACATGGGTTTTGGTTGTGGAAGAAGGATAAGAAAATTTGCACTTCTTCGTCTTGCTTAGTTGATGAAGATCTTCGAGATATTGCACAACGAGGGATGAATGCGTGGGAGAAGATACGGTCAGGTGCTTTACAACTCATGGAAAAATATGCAGTTCAAACTTGTGGCTATTGCCCCGTGGTTCAAGTAGGGCCTAAGGGACATCGTGCTAGGATTTGCCAGGCGTACAAGCATCAAAGACGGGCTGGGCAACATGCTTGGCAGAAGGCGACCATTGATGATTTGGTGCCGCCAGTTTATGTGTGGCATGTGCCTGCTTGTAATGGTGAAGTTCTTGTGCATGAGCTGAGGAGATATTATGGGAAACTCCCTGCTGCAGTTGAGCTCTTTATGCAGGCTGGTGCTTGTGTGGGGGATGCTTATGGTGAGATGATGAGGGAGGATGTGGCCGTGCCTGGGCTGGATGAGGCAAAATTTGTTGTATGAAGTTTGACTTCTGTTAGATCAAGTTCTAGCCTCAACTTCAAACTGGTACGGAAATGTACTTCAAGATTTTATACTTAAGCTATAGACATGTGTGAGTCACACTAAAGTGCAGAGGATATTAAATTGGTCTAGTTTGGGTTGAGTTGACCCCTGTATGATCCAATCCAAATATATTTCTATATCAATATATGGGTAGGGTCAAGGTTAACTAAATTTGACCCATGACTAGCTTCTAGTTAGGTTTATTTTGGATCAACCTGAAAATATTGTTGCCTAATTGATAATGATGGAGAGTTACTTATTGAGGATAATAAGCTATTTGGAAGAAGTGATTAAAATTTATAGGAAGAAGAATGGAATAATATTTGGGAGAGAAAAAGATCAAAATAGTAGAGAAAGAAATAAATATAAGACACCTAGACTTAATATGAGAATATGATAATGCTAATTTTTGCAATCCACTTGAAATATTACCATGAGAGCACTTTAAATAGACACCACATAAAATTCAATTGCAATATTAGACAGATAAT

Network for GWHGAAEX013898

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05634.10	APO_RNA-bind	61	246	1.00E-58
PF05634.10	APO_RNA-bind	274	397	5.30E-23

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003723	Molecular Function	RNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	26.010
SRP064423	SRR2545915	Juvenile tuber	11.540
SRP108465	SRR5643513	five period of Gastrodia elata	5.930
	SRR5643514	five period of Gastrodia elata	3.700
	SRR5643515	five period of Gastrodia elata	4.080
	SRR5643524	five period of Gastrodia elata	4.080
	SRR5643525	five period of Gastrodia elata	7.790
	SRR5643528	five period of Gastrodia elata	5.310
	SRR5643658	five period of Gastrodia elata	6.320
	SRR5643659	five period of Gastrodia elata	4.350
	SRR5643660	five period of Gastrodia elata	5.630
	SRR5643661	five period of Gastrodia elata	4.130
	SRR5643662	five period of Gastrodia elata	5.070
	SRR5643663	five period of Gastrodia elata	5.490
	SRR5643664	five period of Gastrodia elata	6.470
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.290
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.130
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.830
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	19.210
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	15.910
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	22.950
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	13.340
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	14.750
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.240
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.340
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.010
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.010
SRP279888	Gastro	Gastrodia elata tuber	6.79
	Juven	Juvenile tuber	6.90
	Mother_Gastro	Mother tuber of Gastrodia elata	4.80
	Mother_Juven	Mother tuber of Juvenile	5.43