Detail information of GWHGAAEX013905/evm.TU.scaffold_54.115
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4130 | 4.00E-30 | Prenyl protein protease |
| nr | gi|743874655|ref|XP_010907129.1| | 1.15E-133 | PREDICTED: CAAX prenyl protease 2-like isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q8GW19|FACE2_ARATH | 9.00E-103 | CAAX prenyl protease 2 |
| trEMBL | tr|A0A061ETS7|A0A061ETS7_THECC | 1.00E-115 | Farnesylated protein-converting enzyme 2 isoform 1 {ECO:0000313|EMBL:EOY08211.1} |
| TAIR | HS4826976 | 4.00E-30 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000059 | 3097077 | 3132851 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013905
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02517.15 | Abi | 174 | 279 | 3.40E-15 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08658 | RCE1, FACE2 | Biosynthesis of secondary metabolites | map01110 |
| Biosynthesis of antibiotics | map01130 | ||
| Terpenoid backbone biosynthesis | map00900 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0071586 | Biological Process | CAAX-box protein processing |
| GO:0004197 | Molecular Function | cysteine-type endopeptidase activity |
| GO:0030176 | Cellular Component | integral component of endoplasmic reticulum membrane |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 13.900 |
| SRR2545915 | Juvenile tuber | 9.980 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.360 |
| SRR5643514 | five period of Gastrodia elata | 11.930 | |
| SRR5643515 | five period of Gastrodia elata | 12.870 | |
| SRR5643524 | five period of Gastrodia elata | 14.570 | |
| SRR5643525 | five period of Gastrodia elata | 17.500 | |
| SRR5643528 | five period of Gastrodia elata | 16.120 | |
| SRR5643658 | five period of Gastrodia elata | 16.730 | |
| SRR5643659 | five period of Gastrodia elata | 12.610 | |
| SRR5643660 | five period of Gastrodia elata | 10.860 | |
| SRR5643661 | five period of Gastrodia elata | 10.410 | |
| SRR5643662 | five period of Gastrodia elata | 11.300 | |
| SRR5643663 | five period of Gastrodia elata | 12.660 | |
| SRR5643664 | five period of Gastrodia elata | 12.470 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.950 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 15.190 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.310 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.960 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.730 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.820 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.360 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.360 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.510 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.390 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.790 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.790 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 11.98 |
| Juven | Juvenile tuber | 12.42 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 17.73 | |
| Mother_Juven | Mother tuber of Juvenile | 13.39 |