Gene detail

Detail information of GWHGAAEX013909/evm.TU.scaffold_54.121

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1444	5.00E-164	Nucleotide-sugar transporter VRG4/SQV-7
nr	gi\|743798553\|ref\|XP_010925268.1\|	0	PREDICTED: GDP-mannose transporter GONST4 [Elaeis guineensis]
Swissprot	tr\|Q84L08\|GONS4_ARATH	1.00E-164	GDP-mannose transporter GONST4
trEMBL	tr\|F6HH60\|F6HH60_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51556.1}
TAIR	AT5G19980	5.00E-164	golgi nucleotide sugar transporter 4

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000059	3253471	3261575	+

Transcript Sequence
>GWHTAAEX013909 GCCACGCCACGCCACGCCACGCCACGCCACGCCACGCCACGCCACGCCGCCGCCTCTCGACCTGCACAAGGGTATGGACGGGATCCACATGGCTCCACGATCTCGTCCATAGGGTAATGCACGAGCGAACGGCCACTCACTGTCGGTCTAGCCGACACCAACAGTGGATCTGATTAGGGTTGGGCTATAAGAGCTTCGCTTAGCCAAAGGGACTTAGTTTTGATAATACAGCGCCCCCTAAACCCATCCAAATCGAGAACGCCCCTCTCAGGAGTATCCAGAGCCATGCCGGCCTCTGCTATGCGTCTCTTCTACTTCGTAGCTTTGTCTTAGTCTCCGGTTTTCCAATAAGGCCGGTTCTGTTTGCTTAATCCCTTCTCATCTTCGCAGCTTCGTTAGGTTCAGGAGTTAATGAAAATTGTACACCTCCTGTGTGTTGATCATGCCGATCATCAAATTTGAACTGGCAAAACAATACTACGCAACAAGTACTCTTGTTGTGGGATATGCTCTATGCTCGAGCTTGCTTGCTATTATTAACAAATTTGCCATCACGAAATTCAATTATCCTGCCCTCTTAACTGCATTGCAATACTTAACCTCATCTGTTAGTGTATGGATCCTTGGAAAATTGGGATTTCTCCACCATGATCCTTTCACCTTGGAAACGGCCAAGAAGTTCTTACCCGCTGCAACTGTCTTCTATCTTGCTATATTTACCAACACCAATCTTCTCAGACACGCTAATGTAGACACTTTCATAGTGTTTCGATCTTTGACGCCATTACTTGTAGCTATTGCTGACACCGCCTTTAGGTATCAGCCGTGCCCTTCCAAAGTCACATTTTTATCACTGGTGATTATTCTGGGTGGCGCTGTTGGATATGTAATGACTGATTCAGCATTCACGCTCACTGCATATTCTTGGGCTTTTACTTACTTGATCACGATCACAACAGAGATGGTCTACATAAAACATATCGTAACAAAGCTTGGGCTCAACACATGGGGCTTAGTCTTCTACAATAATCTCTTATCCTTGATGATGGCCCCCATTTTTTGGGTTTTGACTGGGGAGTACACCGATGCTTTTGCTGCCATTGGATTGAGATCTGCTGCTTTGTTTGATTTTAGTACATTTGCTGCAGTTGGCTTGTCATGTGTTTTTGGATTGTTTATCAGTTTCTTCGGTTTTGCGGCAAGGAAAGCAATATCTGCCACAGCTTTTACAGTGACGGGTGTCGTGAACAAGTTTCTCACAGTTGCGATCAATGTTCTCATATGGGATAAACATGCCACTCCGGTTGGCTCATCTTGCCTGCTTTTCACTCTGGCCGGCGGGATTCTTTATCAGCAATCGGTAAAGGATATTATGGCACCTTCAGCAGAGCGTGATTCTGATGCGGATGGGCACAACGATTCTGATGGTGGGGACCGGGCATTAAGAATTTTGGTCAAGGATTCCAATGCTTGAACTCTAAATCAGCTTGTTTTTGGCTGATAAACCTTGTTATTGTTGTTGTTGTACTGTAGTAGGTTTATTAATCATCTTGAGAAAATCATTTTTATAAAACTCCATGTTTTGGAAAATTGTTGGTAATTATATTTTCATGGATAAATGCCTAATTTTTCCCCTGATTACTTCTTTTGCATTGTATGTTTTTTTATTATATTGACATAGTTTTTTGTGAGGTCA

Network for GWHGAAEX013909

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03151.15	TPT	24	303	1.50E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	30.090
SRP064423	SRR2545915	Juvenile tuber	53.150
SRP108465	SRR5643513	five period of Gastrodia elata	55.020
	SRR5643514	five period of Gastrodia elata	54.460
	SRR5643515	five period of Gastrodia elata	50.230
	SRR5643524	five period of Gastrodia elata	53.700
	SRR5643525	five period of Gastrodia elata	39.920
	SRR5643528	five period of Gastrodia elata	40.410
	SRR5643658	five period of Gastrodia elata	39.050
	SRR5643659	five period of Gastrodia elata	66.990
	SRR5643660	five period of Gastrodia elata	59.750
	SRR5643661	five period of Gastrodia elata	61.640
	SRR5643662	five period of Gastrodia elata	56.030
	SRR5643663	five period of Gastrodia elata	59.640
	SRR5643664	five period of Gastrodia elata	39.320
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	51.850
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	87.070
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	57.190
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	41.460
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	38.580
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	31.530
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	41.560
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	39.740
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	63.270
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	51.770
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	68.030
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	68.030
SRP279888	Gastro	Gastrodia elata tuber	42.46
	Juven	Juvenile tuber	31.52
	Mother_Gastro	Mother tuber of Gastrodia elata	27.13
	Mother_Juven	Mother tuber of Juvenile	20.99