Detail information of GWHGAAEX013914/evm.TU.scaffold_54.127
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743818186|ref|XP_010931150.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At5g37570 [Elaeis guineensis] |
| Swissprot | tr|Q9FHR3|PP403_ARATH | 0 | Putative pentatricopeptide repeat-containing protein At5g37570 |
| trEMBL | tr|F6HKN9|F6HKN9_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB55461.1} |
| TAIR | AT5G37570 | 0 | Pentatricopeptide repeat (PPR-like) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000059 | 3377574 | 3379785 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013914
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 88 | 115 | 0.014 |
| PF01535.19 | PPR | 159 | 184 | 0.25 |
| PF13041.5 | PPR_2 | 216 | 246 | 5.10E-09 |
| PF13041.5 | PPR_2 | 277 | 325 | 2.80E-10 |
| PF13041.5 | PPR_2 | 379 | 426 | 1.60E-08 |
| PF01535.19 | PPR | 455 | 479 | 0.11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.710 |
| SRR2545915 | Juvenile tuber | 1.850 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.290 |
| SRR5643514 | five period of Gastrodia elata | 4.020 | |
| SRR5643515 | five period of Gastrodia elata | 4.040 | |
| SRR5643524 | five period of Gastrodia elata | 4.300 | |
| SRR5643525 | five period of Gastrodia elata | 1.110 | |
| SRR5643528 | five period of Gastrodia elata | 0.990 | |
| SRR5643658 | five period of Gastrodia elata | 0.750 | |
| SRR5643659 | five period of Gastrodia elata | 5.100 | |
| SRR5643660 | five period of Gastrodia elata | 4.670 | |
| SRR5643661 | five period of Gastrodia elata | 5.020 | |
| SRR5643662 | five period of Gastrodia elata | 4.810 | |
| SRR5643663 | five period of Gastrodia elata | 3.940 | |
| SRR5643664 | five period of Gastrodia elata | 3.260 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.290 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.760 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.590 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.820 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.140 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.200 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.230 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.530 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.760 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.810 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.900 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.900 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.29 |
| Juven | Juvenile tuber | 4.33 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.67 | |
| Mother_Juven | Mother tuber of Juvenile | 2.13 |