Gene detail

Detail information of GWHGAAEX013922/evm.TU.scaffold_54.140

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|337746237\|ref\|YP_004640399.1\|	4.00E-46	sucrose-6-phosphate hydrolase [Paenibacillus mucilaginosus KNP414]
KOG	KOG0228	9.00E-171	Beta-fructofuranosidase (invertase)
nr	gi\|672206783\|ref\|XP_008779528.1\|	0	PREDICTED: beta-fructofuranosidase, insoluble isoenzyme 3-like, partial [Phoenix dactylifera]
Swissprot	tr\|Q0JDC6\|INV3_ORYSJ	0	Beta-fructofuranosidase, insoluble isoenzyme 3 (Precursor)
trEMBL	tr\|I1ZBQ8\|I1ZBQ8_AGATE	0	Cell wall invertase {ECO:0000313\|EMBL:AFJ21580.1}
TAIR	AT2G36190	9.00E-171	cell wall invertase 4

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000059	3666303	3667979	+

Transcript Sequence
>GWHTAAEX013922 TAAAAGTATTTGATTCTGTTATGCTTCCATACTTCTCTTATATGGTCTTTTGTCTTGCGCATGCGCTTTGGTGGCATTGGCGATACGGCATCAGATCCAAATGGTAAGCTGGCACTTCTCATTCTAATTTATTCCAAAGATTAATATATGATTAAGAAGAATACAAAGATTATACATATAATAATATCAATAATGAGCGCAGGGCCAATGTACTTCAACGGCTTCTACCACCTGTTCTACCAGTTCAACCCGAAGGAACCCGTATGGGGCAACATCGTGTGGGGTCACTCGTACTCCACGGACATGATCAACTGGAACCCGCTGGAGATTGCCATCGGCCCATCCAAGCCGTTCGATGTGAACGGCTGCTGGTCCGGTTCGGCCACCATTCTCCCCGGCGGCAAACCCGTCATCCTCTACACCGGCATCGACGATCAGGGCCGGCAGGTCCAGAACGTCGCCTTTCCCAAGGACCCGTCCGACCCGCTCCTCCGCAAATGGGTCAAACCCGATTACAACCCGGTCATCGACCCGGCGGGCGCCGTCAACGCCAGCGCCTTCCGTGACCCCACCACCGCCTGGCGGGGCCCCGACGGCCTCTGGAGAATCGTCGTCGGCAGCCACAGGGAGTCGTGGGGCGAGGCCATCCTCTACAGGAGCCGCGACTTCGTCAAGTGGGAGAAGGCGAAGAGCCCCCTCCACACCGTTCAGGGGACCGGAATGTGGGAGTGCCCTGACTTCTTCCCCGTCTCCCGCCAGCCCTATGTCGGCCTCGAGAACTCCGCGATCACAAACAGGTCGAAGCACGTGTTCAAGGTCAGCCTGGACGTCACCAGGTACGAGTACTACACGATAGGGACCTACGACTTCGCGAACGACAAGTACGTCCCCGACGGGCTGTCTCCGGACAACCACTCCGGCCTCCGGTTCGACTACGGGAACTTCTACGCTTCGAAGACGTTCTTCGACCAGGGGAAGAGGAGGCGGATTTTGTGGGGCTGGTCCAACGAGTCCGATACTAGCCAGGATGATTGGGAGAAGGGCTGGGCCGGGGTTCAAGCGATTCCGAGAGCTCTTTGGCTGGACAGCAACGAGAGGCAGGTGGTGCAGTGGCCCATAGAGGAGGTGGAGAAGCTGAGGCACAGTCCGGTTGCCTTCTATGGAAGGACCCTTCAATTGTTGGAGGTCAAAGGGGTTCATGCAGCGCAGGTGGACGTGGAAGCTGTCTTCGAAGTCTCGCTGGGCCTTGAACGGGCGGAGAGATTCGATCCCTTGTGGACGGACCCGCAGAAGCTCTGCGTTCAGAAAGGGGCAGATGTGAAGGGTAGGCTCGGCCCTTTTGGCCTATATGTGTTGGCCACTGCTGATCTGCAGGAACGAACTGCGATTTTCTTTAGAGTTTTCAAGACCGATCAGGACAAGCACGTAGTTTTAATGTGCCATGATCCCACCAAGTAA

Network for GWHGAAEX013922

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00251.19	Glyco_hydro_32N	19	323	3.40E-100
PF08244.11	Glyco_hydro_32C	326	417	9.70E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01193	INV, sacA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Galactose metabolism	map00052
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.000
SRP064423	SRR2545915	Juvenile tuber	0.000
SRP108465	SRR5643513	five period of Gastrodia elata	0.510
	SRR5643514	five period of Gastrodia elata	0.250
	SRR5643515	five period of Gastrodia elata	0.000
	SRR5643524	five period of Gastrodia elata	0.000
	SRR5643525	five period of Gastrodia elata	0.000
	SRR5643528	five period of Gastrodia elata	0.000
	SRR5643658	five period of Gastrodia elata	0.000
	SRR5643659	five period of Gastrodia elata	0.000
	SRR5643660	five period of Gastrodia elata	0.000
	SRR5643661	five period of Gastrodia elata	0.000
	SRR5643662	five period of Gastrodia elata	0.000
	SRR5643663	five period of Gastrodia elata	0.000
	SRR5643664	five period of Gastrodia elata	0.000
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.000
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.000
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.690
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.000
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.480
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.220
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.000
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.000
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.570
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.000
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.000
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.000
SRP279888	Gastro	Gastrodia elata tuber	0.00
	Juven	Juvenile tuber	0.00
	Mother_Gastro	Mother tuber of Gastrodia elata	0.54
	Mother_Juven	Mother tuber of Juvenile	0.00