Gene detail

Detail information of GWHGAAEX013924/evm.TU.scaffold_54.143

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4270	6.00E-146	GTPase-activator protein
nr	gi\|672108922\|ref\|XP_008787611.1\|	4.92E-176	PREDICTED: rho GTPase-activating protein 5-like [Phoenix dactylifera]
Swissprot	tr\|Q9FMR1\|RGAP1_ARATH	2.00E-146	Rho GTPase-activating protein 1
trEMBL	tr\|M0RIJ8\|M0RIJ8_MUSAM	2.00E-162	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P15720_001}
TAIR	AT5G22400	6.00E-146	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000059	3756707	3768488	+

Transcript Sequence
>GWHTAAEX013924 TTATTCATTCCCTAACTCATATTTTATATTACATAAGAACTTCAAAAATATACTATTATAAGCAAAAGGAGCTCCTTTATCTAAGCATCAAACAAACACTGTACGTTAGTAGCCCAATTTTGAAGTAAAGTGAGCACTGGTCCACCCAGCTTCTCAATGGAGATTCCCATCTTGCCCCTCATTTCAAAAAAAAGATTAAAATTCGTTTTTTTCTTCTGATTTCACCTCCTCTGCTTCCACTTTTTCTTCTCCCCTTCATCCACCTCCTCTCCTTCCCTAAACAAAAATCCATACTAGGAAAGCATAAAAAATACTGCCAGAGTGATGATTCCCACGTTCTACCTTCCAAAACCAAAGCCTTTAGCTTCAATCCAACTCCACAGAGGAAAATTCCAGCCAAATTCAGACAAGCAAAGGAAAAAAAGACAAACCCTAGCTAGTTCAGAACATCCCATTAGATTTGGGCCCTTTTCACGCGGGTTCTGACCATAATATTCCCACCCCTTTGCCCCCTTTGAGAGCCATGACCCAAGTGCTGAGATCCCCGCCACAGCTCCCTTCATCAGCAAGCTCCCCCATTTCTTTCTCCTCCAATCATGATTCTCAAGCCCTTTTAACTTGCGCTCAGGTTGAGAGTGGTAATAAGGAAAGGATAGGAGGAAGAAGGCAGGAAGAAGAAGCAGACGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGGGAGAGTACTGCTCAGAAAGGGGAGGTGGAAGGACAGCTGCCGGTTTTGGCGTTTATACTGGCCGTTCTTAAGAAAGTGAGGTGCAGGTCGTCGGAGGAAGTCGACGGCCGGATGGAGATCGGGTGGCCAACCGATGTGCGCCACGTGGCTCACGTCACCTTCGATCGATTCCATGGATTCCTTGGTCTTCCTGTTGAATTCGAGCCAGAAGTTCCCCGGCGAGCCCCGAGTGCTAGTGCGAAGGTGTTTGGTGTTTCGGCAGAATCTATGCAATGCTCATTTGACTATAGAGGAAATAGTGTCCCAACAATACTCTTGCTGATGCAGAGCAGCCTATATGAACAAGGAGGCTTAAAAGCAGAAGGAATATTCAGAATTAATGGTGAGAATAGCCAGGAGGAGTATGTGAGAGATCAATTAAACAGAGGAGTGGTGCCAGATGGGATTGACGTGCATTGTTTAGCTGGTCTGATTAAGGCATGGTTTAGGGAACTTCCGGCTGGCGTGCTCGACTCCCTTTCACCAGAGCAGGTAATGCTGTGCCAAACAGAAGAGGATTGCGGGCAACTTGCAACAAGTCTGCCTCCTACAGAGGCTTCATTACTCAATTGGGCAATTAATTTGATGGCTGATGTTGTTCAGGAAGAACATGAAAACAAAATGAATGCCCGCAATATTGCTGTGGTCTTTGCACCAAACATGACTCAGATGGCAGATCCGTTGACTGCGCTGATGTATGCGGTTCAAGTGATGAACTTTCTTAAAATGCTGATACTCAAAACACTTAAAGAAAGGCAAGAGCTTGCACTGGAGGACTCTAAGGCTCCCCCTTCAGATCCTCCTGACAAAAATGACCTTCAAAGGTTTGAACTTCGATTTCATTATGAAGAGAAGACCAATCGAGCTTGTGTTTCTGAAAATGGGACATTCAATCAAGAAGAAAACTCTTCAGAAGATGCACTTGCTGTGTCTCCATCTCCTTGCAAGGAACAAGAGGAATTGGCAGCTCAAGGGAGCAGTGAAGCTGCGTCCACCCCAAGATTAGAATTAGCCGTTGCTACCGAAGTTTTCTCGAAAATTCATGCAAATTCTCGTAAAAACAGATTTGGGCAAGCGAAGAATTCATCGAACCAAAAGAAAAGCCTAAACTTTAGCAGACAGCCAAACTCTAGAACATGCAAACCAGCTGAGAAGCTCAAAGGAGCAGACAGTGTGAGTCGTATAAATTCAAAAACAGAACGTGTTGAAGCTTGGAGGTGAAAGTTTTCTGATGTCTTTTAGTGAAGCCATTCCTTGTGACTGACATGACTTATATCTCTGATGGCTTATGCTTTGTCATCAGCTTTGGGTTTTTTTTTCTTTGTTTTATGTATTTTTATTTCTGAATATAATATTTCTGTTCATGCTGTTTGATTTTTACTAATACTAACGCTGATTGATAGTTTGATATGCATAGTGGAATGTTGCATTGGATTTTTCTTTATTGGGTTTATGGTATCATTATATCAAAAGTATTTTTCATTGGTGTTT

Network for GWHGAAEX013924

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00786.27	PBD	104	131	8.70E-05
PF00620.26	RhoGAP	169	301	3.70E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0007165	Biological Process	signal transduction

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	71.990
SRP064423	SRR2545915	Juvenile tuber	60.000
SRP108465	SRR5643513	five period of Gastrodia elata	56.340
	SRR5643514	five period of Gastrodia elata	56.510
	SRR5643515	five period of Gastrodia elata	49.250
	SRR5643524	five period of Gastrodia elata	57.170
	SRR5643525	five period of Gastrodia elata	95.600
	SRR5643528	five period of Gastrodia elata	81.440
	SRR5643658	five period of Gastrodia elata	121.530
	SRR5643659	five period of Gastrodia elata	43.750
	SRR5643660	five period of Gastrodia elata	47.590
	SRR5643661	five period of Gastrodia elata	40.980
	SRR5643662	five period of Gastrodia elata	35.800
	SRR5643663	five period of Gastrodia elata	37.640
	SRR5643664	five period of Gastrodia elata	43.070
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	59.900
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	61.340
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	49.050
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	69.980
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	63.900
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	76.020
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	63.210
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	51.280
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	42.390
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	50.880
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	44.590
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	44.590
SRP279888	Gastro	Gastrodia elata tuber	43.81
	Juven	Juvenile tuber	96.74
	Mother_Gastro	Mother tuber of Gastrodia elata	62.01
	Mother_Juven	Mother tuber of Juvenile	72.87