Gene detail

Detail information of GWHGAAEX013928/evm.TU.scaffold_54.148

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|695061934\|ref\|XP_009419418.1\|	6.12E-67	PREDICTED: protein YLS9 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9SJ52\|YLS9_ARATH	1.00E-44	Protein YLS9
trEMBL	tr\|M0U4M5\|M0U4M5_MUSAM	2.00E-67	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P29680_001}
TAIR	AT2G35980	5.00E-44	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000059	3807810	3808851	-

Transcript Sequence
>GWHTAAEX013928 CCTCCTCCTTCTCCAATGGGTCAGAGCTCCAAATCCACGGCCTCCGGAGGCGGCCTGAACGGCGCATACTACGGCCCATCGATCCCTCCAGCGCGCACACACCGCAGCATCGGCCGCTCATCGGACGGCTGCTGCGACCCCTGCAGCTGTCTCCTCTGCTTCCTCTTCAAACTCGTCTTCTCCATCGTCGTCGCACTCGGAATCATCCTCCTCGTCCTCTGGCTCGTTTTCCGCCCAAACGAGCTCATAGTTTACGCAGAAGGCGCAGATCTCTCCGCCTTCAGCCTCAGCAACTCCTCTTCCGCCCTCTCCTATAATCTCTCCCTCTCCCTCAGCATCCGAAACCCTAACCGCAGGATCTCCATCTATTACGACAGTCTCGAGGCCGTCGCCCTCTATGACGGCTCCAGATTCGGCTACGACGGCTCCATCCCGCCCTTCTTCCAGGGTCACAAGAACACCTCCGTCGTGTCGGTTGGGTTCCAGGGCCAGGCGCTTTCTCTCGGGGTTGTCAAGGGGACCTTCGAGAGGGAGAAATCCGAGGGGAATTTCTTCGTCCAGGTGAAGTTCAACCCTAGAATTCGCCTCAAGGTCAAGTTCGTCAAGGTCGGGCACTTCAAGCCCAAATTCGATTGCAATTTGAAGCTTTCTGTGCCACCCGCCAAGGGCTTCGAGCGGACAAGGTGCGATGTCGACTGGATATGATGACTCCCTGATGCTGATGGCCGCCACCAGGTCAACTTGATGCTTTCGTTTCCTTCTTTGCGTCTTGTGTTTGATTTTTCTTTCTTTTGTTTTGATTCGTTGTGTCGCCCGCACTGTGCAGATGTATATTAATGGACATATTATTTTTTATTTATTTATTTTGAAGCTTGGTTTCTTGATCGTAGGTAGAAGTAAAAATTATCTTAAAAATTGAAAAGTTTGCGATTTATATTTCAAATTATTTTTTATGAGAAAATGTTAGTGCATTAAAATTTCAAAAAAAGGTTATTTATTAAATGATGGAGAAATATAGTTACGATCTTCAAATCAAAATGCG

Network for GWHGAAEX013928

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03168.12	LEA_2	106	199	1.20E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	144.630
SRP064423	SRR2545915	Juvenile tuber	113.750
SRP108465	SRR5643513	five period of Gastrodia elata	135.840
	SRR5643514	five period of Gastrodia elata	65.920
	SRR5643515	five period of Gastrodia elata	225.270
	SRR5643524	five period of Gastrodia elata	89.620
	SRR5643525	five period of Gastrodia elata	912.000
	SRR5643528	five period of Gastrodia elata	791.840
	SRR5643658	five period of Gastrodia elata	598.170
	SRR5643659	five period of Gastrodia elata	162.170
	SRR5643660	five period of Gastrodia elata	26.470
	SRR5643661	five period of Gastrodia elata	66.600
	SRR5643662	five period of Gastrodia elata	157.010
	SRR5643663	five period of Gastrodia elata	65.180
	SRR5643664	five period of Gastrodia elata	872.480
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	433.470
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	900.080
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	247.730
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	329.800
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	329.070
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	403.390
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	444.310
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	337.190
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	149.330
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	335.190
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	311.680
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	311.680
SRP279888	Gastro	Gastrodia elata tuber	116.45
	Juven	Juvenile tuber	32.04
	Mother_Gastro	Mother tuber of Gastrodia elata	765.28
	Mother_Juven	Mother tuber of Juvenile	374.18