Gene detail

Detail information of GWHGAAEX013930/evm.TU.scaffold_54.150

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|296133478\|ref\|YP_003640725.1\|	1.00E-24	serine/threonine protein kinase [Thermincola potens JR]
nr	gi\|743794709\|ref\|XP_010924244.1\|	0	PREDICTED: lysM domain receptor-like kinase 3 [Elaeis guineensis]
Swissprot	tr\|F4IB81\|LYK3_ARATH	5.00E-116	LysM domain receptor-like kinase 3 (Precursor)
trEMBL	tr\|A0A061EE61\|A0A061EE61_THECC	0	Kinase family protein / peptidoglycan-binding LysM domain-containing protein, putative {ECO:0000313\|EMBL:EOY00579.1}
TAIR	AT1G51940	8.00E-116	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000059	3850085	3854362	+

Transcript Sequence
>GWHTAAEX013930 GCCATTTGTGCTTCTCTTCTCAAATCCCTTCCCACCCCAAATAATTTAACTAAGAAAATTTCAATCAATAAAAATCAAACCTATTCCATAAAATGACAAAAATCAAAGATCAGATAACGCGCCACAACACAATCCTTAATTAAAAAATTTCAAAACATTTTTTTTAATTCATTAAATTATTACTTTCACTTGGGATGAAACCCACGAGAGGAGTCGCTCTTCCTTCCCGCAAGCAACCCATGGCTCTACCCCTCCTCCTACTGCTCCTCCTTCTCCTCCTCCTCCTCTCCCTCTCCGCCGCCGAGAACTCGACAATTCCGATCGCCTGTGACGCGCCGTCGCCTGCCGCGACATGCAACTCTCTCCTCTACGCCCAATCCCGCAACCTCTCCCTGCTCGCCGTCGCCGCGCTCTACTCCGTGAACGCCTCTCTCGTGCGCAACGTAACGCGCTCGTCGGGCGCCGCCGACTTCCTCGTCCAGGTCCCGTGCTCGTGCACCGCCGCACCAGAAGGCGTCACCGCCTTCTTCTACAACGTGCCGTACCGCGTCGTCGCCGGCGACACCGCCTTCGGCATCACGGACGACCTGTTCAGCGGATTGCCTTGGAACGTCCCCGCGTCGATCGAGGCCGGGCAGAACATCACCGTCCATCTCCCCTGCGGATGCCTCTCCGCCGAAAATCCCGTCGTCAGCTACGCCGTCGAGACCGGCGACACTCTGCTCACAATAGGGGAAGCCTTCTCCGCCGACCCTGATCGGACGATCCGCATGAACCCCCAACTAGCCGCCAATCCTAACTTTTTGAACCTCGGATGGGTGCTCTTCGTGCCCATGGGCACCGCCACTTTCAGCAGGAAGAAGACCGGGCTGATATTGGGAATAACGATACCGGTGGTGGTCGCGATCTCGTTGGCTGCGCTTTTGCTACTTCTATGGCGGTGGCGGTCGTATAGAAAATATCTGCGGGAGCAGGCGAAGAGGAAGGCAAATGGAAAGACACGGCTCGCTGTTCTGGAAGGCCAATACAATCTTGAAGATGGGCAGGGATTTGAGTCGGACAGACCCGTAATTTTTAGTCTGGAGGAGGTGGAGAAGGCCACGTCAGACTTCGATAATTCAAGGGTGATCGGAGTGGGCGGCTTCGGCAGCGTCTTCTACGGAATTCTCGGAGACAAAGAGGTGGCTATCAAGAGAATGAAGTCGAAGGAGTCCAAGGAGTTCTTCGCCGAGCTGAAGGTCCTCTGCAGAATCCATCACATAAATGTGGTGGAGCTAAACGGATACGCGAGCGGCGACGATTATCTGTATCTGGTATACGAGTATCTGCACAATGGGTCGCTGAGCGATCATCTTCATGACCCGCTTCTAAAAGGGCATCAGCCGCTGTCGTGGACGGCGAGGGCTCAGATAGCGCTGGACGCGGCGAGGGGGATCGAATACATTCACGACCACACCAAGGCGCGCTACGTGCACCGAGACATCAAGACCAGCAACATCCTGCTGGACAACGGGCTCAGAGGAAAGGTGGGGGATTTTGGGCTCGCAAAGCTGGTGGAGCGCAGCAGTGAGGACGACTTTATTGCAACCAGGCTGGTCGGAACCCCCGGCTATTTACCTCCAGAGGCACTGCTGGAAGGGCAGACTTCGACGAAGACAGATGTGTATGCGTTCGGGGTTGTGCTGGCAGAGCTCATCACAGGCTGCCGTGCCCTCGTTCGGCATAACAAAGAGCCCACAAAAATGAAGTCACTTGTCGCAGTTATGAAGGCTGTTTTTGTGGAGGAAGAACCAGAGCATGCGCTGGAAGAAGTGATAGACGGAAACCTAAAGAACAGCTTCCCCTTGGAATCGATCTTCAAGATGGCTGAGACTGCAGCTTGGTGCCTTAGCGACGACCCCTCCGTTCGGCCGGAGATAAGCGAGATAACGGTGAGGCTGTCTCAGATTCTCGTGGCATCAATAGAGTGGGAAGCATCTCTGGGAGGGAGTGAAGACATTTTCAGCGGGGTGATCAAAGGAAGATAAAAATGTGCAGAATTTGGAGTCCTAATTATTCAATAACAAGAAACGCTCTGGTTTTGATTTCTATGGTTTGATCACTTTTTTTTATAAGATGTAATGAAATTCTTTTGTATATTTAAAGTTAAAAGCGCGGAGTCATAGAAAGTCTGACTATATAGAATATTCATGTACATTCATAATGTGACCAACCTATTGCAAGATTCCTATTCTTTTCATAAATTATTCATGTGATACAAGTATACAATCATGAATATATATATGTATATAAATATCAATGTACA

Network for GWHGAAEX013930

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	307	578	3.20E-47

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LysM
Carbohydrate-Active enzymes Family	CBM50

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0005524	Molecular Function	ATP binding
GO:0004672	Molecular Function	protein kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.530
SRP064423	SRR2545915	Juvenile tuber	1.000
SRP108465	SRR5643513	five period of Gastrodia elata	29.820
	SRR5643514	five period of Gastrodia elata	24.020
	SRR5643515	five period of Gastrodia elata	22.170
	SRR5643524	five period of Gastrodia elata	21.100
	SRR5643525	five period of Gastrodia elata	5.080
	SRR5643528	five period of Gastrodia elata	3.120
	SRR5643658	five period of Gastrodia elata	1.380
	SRR5643659	five period of Gastrodia elata	0.720
	SRR5643660	five period of Gastrodia elata	0.510
	SRR5643661	five period of Gastrodia elata	0.760
	SRR5643662	five period of Gastrodia elata	0.990
	SRR5643663	five period of Gastrodia elata	0.250
	SRR5643664	five period of Gastrodia elata	1.110
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	36.820
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	52.190
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	47.350
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	22.670
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	32.830
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	31.900
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	28.750
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	21.250
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	28.780
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	52.740
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	70.990
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	70.990
SRP279888	Gastro	Gastrodia elata tuber	0.71
	Juven	Juvenile tuber	4.28
	Mother_Gastro	Mother tuber of Gastrodia elata	54.34
	Mother_Juven	Mother tuber of Juvenile	23.36