Gene detail

Detail information of GWHGAAEX013932/evm.TU.scaffold_54.152

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4197	5.00E-123	FOG: PPR repeat
nr	gi\|743794208\|ref\|XP_010924115.1\|	0	PREDICTED: pentatricopeptide repeat-containing protein At5g40400 [Elaeis guineensis]
Swissprot	tr\|Q9FND8\|PP409_ARATH	7.00E-127	Pentatricopeptide repeat-containing protein At5g40400
trEMBL	tr\|M0SX67\|M0SX67_MUSAM	1.00E-158	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P09880_001}
TAIR	AT5G40400	5.00E-123	Pentatricopeptide repeat (PPR) superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000059	3867472	3895000	+

Transcript Sequence
>GWHTAAEX013932 ATGCTCAAATGCTCGACTGGTAGAACCTCACGCGCTCAAGTGCCCGACGAGTACAACGTTGAAAATGTCAAATCAATGGAGGAAAAGAGGCGTCCCTTGACCCTCCAAGAGGCAATTTTGGGCGGTGAGAACAAAGATGGAAATTTGATTACATTTGCAATATACAGGGATTGTGGGTCCGAAGTCTTGAGATTTCGTACGAGATCAGCTAAAGACAATATTAGGCCACGCCCCCCTGCCCAGCCTGCCCGAGCTGGCCGGAGGTCGGGCGGGCAGCTCCTCCTCCCTATAAATAGGGCTGATCATCTTCTCATCTTCACTCAAGTCTCTCCTCCTCCACCTCCTTCTGGCCACGGACCTCACTCCTCCACCTCCCTAACTTGCCGGCAACCTCCAACAATTCTCTCACTTCCGCCTCGGCAACCCCAAAGTCTCCCCCCACCCCTCTTCCTCTTCTTCTTCTTCCCCGGCCAACAGCCGCCCTCGCCCAGCCACCTCGCCATGCCGACGCCACGTCGGTACGCTGCCGAAATTCTCATGAGTCGTCTACCTCCTCCGCAAGTCTCCGCCGCCCTCGGCAAGCCCCCTTTGAACGGGAAGAAAGCCCACAAAAATACAAAAAAAATTGGTCTACTCCCGGCGAATAATGATGGCATGAATCGCGCGCTTGCCGGAGCTCCGTCTCCTCCCCTGCCGTCCCTTCTCCATCCCTCCATTAACCCCTCTGCTTCGGCCATAGACATCGTCTCCTCTGCCCTCCGCCTGGTCTCATCCCCTTCGTCCATCCCTTCCCTCATCCCTCCATACCTGCTTCCCTTCATCGGCCCCTCAGAGCTCTCTTCCATCCTTCTCCGCTCCCAATCTCTCCCCCTCCCTTCCTTCCACCTCCTCTCCTTCCTCCAATCTCGCCTCGCATTCACCCCTTCCCCGCAGCACTTCTCCCTCCTCATTCACTCCCTCGCCTTCTCCCGCCTCTTTTCCCTCTCCCTCTCCGCCCTCAGCCGCTTCATCTTCACCCATCCCTCTTCCGACCCCTTCTCTTTCCTCCTCTCCACCGCAGCCGCTGCCCGATGCAACTTTCACCCCTCCGTCTTCTCCCTCCTCGTTACCTCCTACCTCCGCCTCGGCCGCCTCCGCCATGCTCTCGATGCATTTCGCCGTGCCCTCAATGCCGGATTCTCCCCGGATCTCTCCACCTTGAATTCTCTCCTCACTTCTCTTTCCAGATCTGGCGACTATGAAACTTGCTGGGGGGCTTACGCCATGGCCAGGAGGGCCGGCGTTTTCCCCAATCTACGCACTTTCAACATTATGATCAACGCTCTCTGCAGGGCTGATGATGCCGCGAGAGCCTTGAACTTCTTGGAAGAAATGGAGATTCATGGGTTTGATCCCGACGTCGTCACTTACAACACGCTTATTAACGGGTATTGCCGGAAGGGTAGGACCGATGAGGCGCTGAGGCTGTATAACCTTATGTTTCGAAGAGGGATCGAGCAGGATTTGGTGTCTCACACGATTCTGATGAAGGCGCTCTGCAGCGAAGGGAGGGTGCGGGACGCTCGCCAACTGTTCGACAAAATGTGTCAGAGGGGCATCTGCCCGGATGAGATTTGTTACAATGCTTTGGTGTCGGGGTATTGTAGGGAGGGAATGATGCAGGAGGCGTGGGCGTCGGTTCAGGCGATGATCGGCTGCGGGCTCCTTCCCGACGGCTTTGTTTGCTTGGAGTTAGTGAAAGGTTACGCAAATGCCGAAAAGCTGCTTCCTTGTTTAAACTTGCTGGCGCAGCTTCGCAAGCTTGGGGCGGCCATCACTCTCGATGCGTATAAGTTTCTTCTCCGTGCGTTGTGCCGTGAGAGGAGACCGAATGCCGCAAGGAGTGTTGTGGATTGGATGGTTGAAGATGGGTGCAAGCCTGATGTAGATGCGTATAATGCGATCATCACGTCTTTTTGCGACTGCGGTTTGTCGGTTGATGCCTTTTCTCTCATGGGCGAAATGGCTGAGATGGATGTTAGCCCTGATCAAGATACATATGCCGTACTTATCACTTGCCTTTGTAGATTGGGGCAGATTGGGGAGGCCGAATGCTTGATGGAAGAAATGGTTGCATGTGGATGCTTACCAAATTCTGCTATCTGTGCTGCATTGGTTAGTGGATACTGCAGTAGAAGAGAATTGAATAAGGCTGAAGGACTTTTAAAGTATTTTGTGTTGCAGTTTGGGTTCCATGATAATCACATCTTTAATGCTCTGATTAGAGTCGGCACTGAAGAAAGGGGTATGGAGAAAGCATTTGACTTGACAAACAGATTGTTAAAGCTGGGTTTTTGTCCGAATCCTGAAACCTGCAGGCTGTTGATTACTGGACTGTCAAGAAATTTGCTGGCTTGCCAGTGATTAATCAAGAGAATGGCTCCATTGCTAATTACAGTCCGGTAATGATACTTTTCCTCTGTTAATTTCTTTTTCTCTTGTGGAGTTTTGCACCCACATAATGACAATTAAGCCAGCGAAATGCACTTATCTGTGAAGTAGCACTTGCATCATAATGAAGGAACCACAGGCACACAAATCGACTCGCCTTTACTTGCACAACAATGAAATTTCTTATTGTGTCCATTGAATTCGTTTTGACTGGTTTTGGACTTGACATATATGCATTCCACTGATGGGACTCCCCAGTGGGCACTACTCTATGATAGAGATCAGCGTAGTAAGATTTCTTTTGGGGATTATCTTTTGATTGGATTTCTAATATCTTATTTATATAATGCATCCATTTTTGTAATATCCTCGCAACTTA

Network for GWHGAAEX013932

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01535.19	PPR	364	392	1
PF12854.6	PPR_1	427	459	5.50E-10
PF13041.5	PPR_2	465	514	1.30E-18
PF12854.6	PPR_1	531	557	7.30E-09
PF13041.5	PPR_2	640	689	2.00E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.590
SRP064423	SRR2545915	Juvenile tuber	4.410
SRP108465	SRR5643513	five period of Gastrodia elata	8.280
	SRR5643514	five period of Gastrodia elata	8.800
	SRR5643515	five period of Gastrodia elata	8.530
	SRR5643524	five period of Gastrodia elata	8.740
	SRR5643525	five period of Gastrodia elata	6.800
	SRR5643528	five period of Gastrodia elata	5.950
	SRR5643658	five period of Gastrodia elata	6.260
	SRR5643659	five period of Gastrodia elata	10.890
	SRR5643660	five period of Gastrodia elata	9.140
	SRR5643661	five period of Gastrodia elata	11.870
	SRR5643662	five period of Gastrodia elata	9.590
	SRR5643663	five period of Gastrodia elata	9.470
	SRR5643664	five period of Gastrodia elata	8.480
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.940
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	12.490
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.300
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.130
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.230
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.760
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	8.670
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.000
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	14.350
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.900
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.920
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.920
SRP279888	Gastro	Gastrodia elata tuber	5.95
	Juven	Juvenile tuber	5.15
	Mother_Gastro	Mother tuber of Gastrodia elata	3.53
	Mother_Juven	Mother tuber of Juvenile	2.53