Detail information of GWHGAAEX013936/evm.TU.scaffold_54.159
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|305662612|ref|YP_003858900.1| | 2.00E-06 | 50S ribosomal protein L30 [Ignisphaera aggregans DSM 17230] |
| KOG | KOG3184 | 2.00E-77 | 60S ribosomal protein L7 |
| nr | gi|743773393|ref|XP_010917039.1| | 4.03E-119 | PREDICTED: 60S ribosomal protein L7-2-like [Elaeis guineensis] |
| Swissprot | tr|P60040|RL72_ARATH | 9.00E-78 | 60S ribosomal protein L7-2 |
| trEMBL | tr|B3TM16|B3TM16_ELAGV | 1.00E-119 | 60S ribosomal protein L7-like protein {ECO:0000313|EMBL:ACF06597.1} |
| TAIR | AT2G44120 | 2.00E-77 | Ribosomal protein L30/L7 family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000059 | 4083967 | 4088323 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013936
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08079.11 | Ribosomal_L30_N | 14 | 77 | 2.20E-12 |
| PF00327.19 | Ribosomal_L30 | 91 | 140 | 2.60E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02937 | RP-L7e, RPL7 | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0000463 | Biological Process | maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0022625 | Cellular Component | cytosolic large ribosomal subunit |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 104.360 |
| SRR2545915 | Juvenile tuber | 95.080 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 151.920 |
| SRR5643514 | five period of Gastrodia elata | 135.170 | |
| SRR5643515 | five period of Gastrodia elata | 138.190 | |
| SRR5643524 | five period of Gastrodia elata | 134.950 | |
| SRR5643525 | five period of Gastrodia elata | 133.170 | |
| SRR5643528 | five period of Gastrodia elata | 141.930 | |
| SRR5643658 | five period of Gastrodia elata | 85.770 | |
| SRR5643659 | five period of Gastrodia elata | 195.530 | |
| SRR5643660 | five period of Gastrodia elata | 200.960 | |
| SRR5643661 | five period of Gastrodia elata | 211.210 | |
| SRR5643662 | five period of Gastrodia elata | 199.770 | |
| SRR5643663 | five period of Gastrodia elata | 192.680 | |
| SRR5643664 | five period of Gastrodia elata | 177.800 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 140.340 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 209.670 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 160.130 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 148.450 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 154.880 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 148.540 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 149.950 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 146.130 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 169.050 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 164.310 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 179.070 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 179.070 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 239.98 |
| Juven | Juvenile tuber | 156.03 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 64.83 | |
| Mother_Juven | Mother tuber of Juvenile | 120.39 |