Detail information of GWHGAAEX013942/evm.TU.scaffold_54.166


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|186685368|ref|YP_001868564.1|6.00E-14hypothetical protein Npun_F5300 [Nostoc punctiforme PCC 73102]
nrgi|695055560|ref|XP_009415966.1|4.80E-159PREDICTED: F-box/WD-40 repeat-containing protein At3g52030 [Musa acuminata subsp. malaccensis]
Swissprottr|Q9SV01|FBW4_ARATH6.00E-112F-box/WD-40 repeat-containing protein At3g52030
trEMBLtr|W5ESU1|W5ESU1_WHEAT2.00E-141Uncharacterized protein {ECO:0000313|EnsemblPlants:Traes_4DS_C3EBE1CBB.1}
TAIRAT3G520305.00E-100F-box family protein with WD40/YVTN repeat doamin

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005942223304279634+
Transcript Sequence

Network for GWHGAAEX013942

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12937.6F-box-like27669.50E-09
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms43.070
SRR2545915Juvenile tuber42.660
SRP108465SRR5643513five period of Gastrodia elata30.400
SRR5643514five period of Gastrodia elata20.770
SRR5643515five period of Gastrodia elata18.120
SRR5643524five period of Gastrodia elata22.230
SRR5643525five period of Gastrodia elata14.210
SRR5643528five period of Gastrodia elata10.190
SRR5643658five period of Gastrodia elata14.770
SRR5643659five period of Gastrodia elata19.100
SRR5643660five period of Gastrodia elata26.530
SRR5643661five period of Gastrodia elata23.710
SRR5643662five period of Gastrodia elata22.940
SRR5643663five period of Gastrodia elata15.400
SRR5643664five period of Gastrodia elata22.990
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_127.230
SRR6049655Rhizomagastrodiae_C368-T10_good_122.110
SRR6049656Rhizomagastrodiae_C368-T07_good_123.450
SRR6049657Rhizomagastrodiae_C368-T07_good_130.610
SRR6049658Rhizomagastrodiae_C368-T04_good_121.820
SRR6049659Rhizomagastrodiae_C368-T04_good_127.650
SRR6049660Rhizomagastrodiae_C368-T01_good_121.510
SRR6049661Rhizomagastrodiae_C368-T04_good_121.910
SRR6049662Rhizomagastrodiae_C368-T01_good_115.060
SRR6049663Rhizomagastrodiae_C368-T01_good_113.360
SRR6049664Rhizomagastrodiae_C368-T10_good_117.080
SRR6049665Rhizomagastrodiae_C368-T10_good_117.080
SRP279888GastroGastrodia elata tuber 31.99
JuvenJuvenile tuber30.91
Mother_GastroMother tuber of Gastrodia elata 11.64
Mother_JuvenMother tuber of Juvenile 20.54