Detail information of GWHGAAEX013943/evm.TU.scaffold_54.167
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|189502236|ref|YP_001957953.1| | 2.00E-28 | hypothetical protein Aasi_0854 [Candidatus Amoebophilus asiaticus 5a2] |
| KOG | KOG1550 | 1.00E-99 | Extracellular protein SEL-1 and related proteins |
| nr | gi|672202020|ref|XP_008778281.1| | 3.37E-141 | PREDICTED: F-box protein At1g70590 isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q94C27|FB84_ARATH | 4.00E-114 | F-box protein At1g70590 |
| trEMBL | tr|A0A067JUZ2|A0A067JUZ2_JATCU | 4.00E-131 | Uncharacterized protein {ECO:0000313|EMBL:KDP26648.1} |
| TAIR | AT1G70590 | 1.00E-99 | F-box family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000059 | 4280142 | 4295882 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013943
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08238.11 | Sel1 | 134 | 152 | 2.60E+02 |
| PF08238.11 | Sel1 | 196 | 228 | 0.00031 |
| PF08238.11 | Sel1 | 229 | 264 | 4.10E-06 |
| PF08238.11 | Sel1 | 266 | 300 | 0.49 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 7.340 |
| SRR2545915 | Juvenile tuber | 5.270 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 12.770 |
| SRR5643514 | five period of Gastrodia elata | 12.160 | |
| SRR5643515 | five period of Gastrodia elata | 11.720 | |
| SRR5643524 | five period of Gastrodia elata | 11.400 | |
| SRR5643525 | five period of Gastrodia elata | 12.880 | |
| SRR5643528 | five period of Gastrodia elata | 9.520 | |
| SRR5643658 | five period of Gastrodia elata | 12.220 | |
| SRR5643659 | five period of Gastrodia elata | 13.330 | |
| SRR5643660 | five period of Gastrodia elata | 13.940 | |
| SRR5643661 | five period of Gastrodia elata | 13.130 | |
| SRR5643662 | five period of Gastrodia elata | 16.180 | |
| SRR5643663 | five period of Gastrodia elata | 13.700 | |
| SRR5643664 | five period of Gastrodia elata | 13.750 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 18.270 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.760 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 16.110 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 24.570 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 17.240 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 20.490 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 18.570 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.750 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 15.080 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 15.090 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.970 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.970 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 15.22 |
| Juven | Juvenile tuber | 31.36 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 20.34 | |
| Mother_Juven | Mother tuber of Juvenile | 20.60 |