Detail information of GWHGAAEX013944/evm.TU.scaffold_54.169


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743878080|ref|XP_010908091.1|1.55E-75PREDICTED: myb family transcription factor APL-like isoform X3 [Elaeis guineensis]
Swissprottr|Q9SAK5|APL_ARATH8.00E-58Myb family transcription factor APL
trEMBLtr|A0A068TU04|A0A068TU04_COFCA5.00E-75Coffea canephora
TAIRAT3G241202.00E-66Homeodomain-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005943612934370171+
Transcript Sequence

Network for GWHGAAEX013944

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00249.30Myb_DNA-binding28792.30E-09
PF14379.5Myb_CC_LHEQLE1201632.60E-24
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGARP-G2-like

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677Molecular FunctionDNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms17.940
SRR2545915Juvenile tuber8.570
SRP108465SRR5643513five period of Gastrodia elata25.810
SRR5643514five period of Gastrodia elata40.170
SRR5643515five period of Gastrodia elata19.980
SRR5643524five period of Gastrodia elata26.760
SRR5643525five period of Gastrodia elata24.850
SRR5643528five period of Gastrodia elata13.000
SRR5643658five period of Gastrodia elata15.580
SRR5643659five period of Gastrodia elata10.110
SRR5643660five period of Gastrodia elata9.570
SRR5643661five period of Gastrodia elata10.760
SRR5643662five period of Gastrodia elata10.800
SRR5643663five period of Gastrodia elata7.710
SRR5643664five period of Gastrodia elata12.350
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_132.640
SRR6049655Rhizomagastrodiae_C368-T10_good_151.900
SRR6049656Rhizomagastrodiae_C368-T07_good_136.620
SRR6049657Rhizomagastrodiae_C368-T07_good_130.470
SRR6049658Rhizomagastrodiae_C368-T04_good_129.100
SRR6049659Rhizomagastrodiae_C368-T04_good_134.630
SRR6049660Rhizomagastrodiae_C368-T01_good_135.370
SRR6049661Rhizomagastrodiae_C368-T04_good_126.490
SRR6049662Rhizomagastrodiae_C368-T01_good_130.310
SRR6049663Rhizomagastrodiae_C368-T01_good_140.180
SRR6049664Rhizomagastrodiae_C368-T10_good_137.750
SRR6049665Rhizomagastrodiae_C368-T10_good_137.750
SRP279888GastroGastrodia elata tuber 16.46
JuvenJuvenile tuber48.57
Mother_GastroMother tuber of Gastrodia elata 35.79
Mother_JuvenMother tuber of Juvenile 23.95