Detail information of GWHGAAEX013947/evm.TU.scaffold_54.175
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0365 | 9.00E-159 | Beta subunit of farnesyltransferase |
| nr | gi|743758178|ref|XP_010925465.1| | 0 | PREDICTED: protein farnesyltransferase subunit beta [Elaeis guineensis] |
| Swissprot | tr|Q04903|FNTB_PEA | 3.00E-171 | Protein farnesyltransferase subunit beta |
| trEMBL | tr|C5XJ66|C5XJ66_SORBI | 0 | Putative uncharacterized protein Sb03g034000 {ECO:0000313|EMBL:EES03578.1} |
| TAIR | AT5G40280 | 9.00E-159 | Prenyltransferase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000059 | 4518951 | 4520324 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013947
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00432.20 | Prenyltrans | 119 | 156 | 4.20E-06 |
| PF00432.20 | Prenyltrans | 164 | 207 | 8.70E-05 |
| PF00432.20 | Prenyltrans | 217 | 254 | 7.80E-09 |
| PF00432.20 | Prenyltrans | 264 | 302 | 7.40E-05 |
| PF00432.20 | Prenyltrans | 370 | 406 | 2.60E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K05954 | FNTB | Biosynthesis of secondary metabolites | map01110 |
| Biosynthesis of antibiotics | map01130 | ||
| Terpenoid backbone biosynthesis | map00900 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0018343 | Biological Process | protein farnesylation |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0005965 | Cellular Component | protein farnesyltransferase complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 22.960 |
| SRR2545915 | Juvenile tuber | 20.120 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 26.270 |
| SRR5643514 | five period of Gastrodia elata | 20.590 | |
| SRR5643515 | five period of Gastrodia elata | 30.260 | |
| SRR5643524 | five period of Gastrodia elata | 24.780 | |
| SRR5643525 | five period of Gastrodia elata | 33.250 | |
| SRR5643528 | five period of Gastrodia elata | 29.220 | |
| SRR5643658 | five period of Gastrodia elata | 28.660 | |
| SRR5643659 | five period of Gastrodia elata | 28.580 | |
| SRR5643660 | five period of Gastrodia elata | 26.040 | |
| SRR5643661 | five period of Gastrodia elata | 28.660 | |
| SRR5643662 | five period of Gastrodia elata | 33.570 | |
| SRR5643663 | five period of Gastrodia elata | 28.100 | |
| SRR5643664 | five period of Gastrodia elata | 24.430 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 23.020 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 15.940 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 21.410 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 20.440 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 18.550 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 26.470 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 22.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 18.770 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 26.120 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 23.230 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 28.110 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 28.110 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 26.44 |
| Juven | Juvenile tuber | 23.24 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 34.43 | |
| Mother_Juven | Mother tuber of Juvenile | 24.56 |