Detail information of GWHGAAEX013951/evm.TU.scaffold_54.180
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1670 | 2.00E-99 | Translation initiation factor 4F, cap-binding subunit (eIF-4E) and related cap-binding proteins |
| nr | gi|514787737|ref|XP_004971406.1| | 2.32E-114 | PREDICTED: eukaryotic translation initiation factor 4E-1-like [Setaria italica] |
| Swissprot | tr|O81481|IF4E1_MAIZE | 8.00E-112 | Eukaryotic translation initiation factor 4E-1 |
| trEMBL | tr|K3XLR6|K3XLR6_SETIT | 9.00E-115 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si002839m} |
| TAIR | AT4G18040 | 2.00E-99 | eukaryotic translation initiation factor 4E |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000059 | 4607179 | 4636602 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013951
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01652.17 | IF4E | 56 | 208 | 2.50E-53 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006413 | Biological Process | translational initiation |
| GO:0003743 | Molecular Function | translation initiation factor activity |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0005737 | Cellular Component | cytoplasm |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 227.950 |
| SRR2545915 | Juvenile tuber | 161.660 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 78.640 |
| SRR5643514 | five period of Gastrodia elata | 75.270 | |
| SRR5643515 | five period of Gastrodia elata | 77.840 | |
| SRR5643524 | five period of Gastrodia elata | 72.780 | |
| SRR5643525 | five period of Gastrodia elata | 80.700 | |
| SRR5643528 | five period of Gastrodia elata | 67.830 | |
| SRR5643658 | five period of Gastrodia elata | 72.460 | |
| SRR5643659 | five period of Gastrodia elata | 71.660 | |
| SRR5643660 | five period of Gastrodia elata | 77.830 | |
| SRR5643661 | five period of Gastrodia elata | 70.590 | |
| SRR5643662 | five period of Gastrodia elata | 62.520 | |
| SRR5643663 | five period of Gastrodia elata | 64.610 | |
| SRR5643664 | five period of Gastrodia elata | 61.970 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 129.460 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 77.190 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 102.550 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 145.370 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 155.060 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 179.590 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 134.090 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 133.990 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 84.770 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 104.850 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 103.500 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 103.500 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 95.21 |
| Juven | Juvenile tuber | 99.42 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 74.74 | |
| Mother_Juven | Mother tuber of Juvenile | 79.81 |