Detail information of GWHGAAEX013952/evm.TU.scaffold_54.181


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|113477320|ref|YP_723381.1|3.00E-13WD-40 repeat-containing protein [Trichodesmium erythraeum IMS101]
nrgi|743813856|ref|XP_010929847.1|0PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Elaeis guineensis]
Swissprottr|O22212|PRP4L_ARATH1.00E-07U4/U6 small nuclear ribonucleoprotein PRP4-like protein
trEMBLtr|W9S4F6|W9S4F6_9ROSA0Uncharacterized WD repeat-containing protein {ECO:0000313|EMBL:EXC14269.1}
TAIRAT5G561900Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005946471274670289-
Transcript Sequence

Network for GWHGAAEX013952

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.31WD403063439.10E-05
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms43.330
SRR2545915Juvenile tuber40.000
SRP108465SRR5643513five period of Gastrodia elata44.000
SRR5643514five period of Gastrodia elata49.590
SRR5643515five period of Gastrodia elata47.430
SRR5643524five period of Gastrodia elata48.870
SRR5643525five period of Gastrodia elata57.350
SRR5643528five period of Gastrodia elata57.140
SRR5643658five period of Gastrodia elata58.680
SRR5643659five period of Gastrodia elata51.720
SRR5643660five period of Gastrodia elata49.910
SRR5643661five period of Gastrodia elata53.740
SRR5643662five period of Gastrodia elata55.920
SRR5643663five period of Gastrodia elata60.220
SRR5643664five period of Gastrodia elata62.020
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_146.520
SRR6049655Rhizomagastrodiae_C368-T10_good_131.880
SRR6049656Rhizomagastrodiae_C368-T07_good_141.170
SRR6049657Rhizomagastrodiae_C368-T07_good_153.370
SRR6049658Rhizomagastrodiae_C368-T04_good_147.450
SRR6049659Rhizomagastrodiae_C368-T04_good_152.600
SRR6049660Rhizomagastrodiae_C368-T01_good_145.920
SRR6049661Rhizomagastrodiae_C368-T04_good_143.880
SRR6049662Rhizomagastrodiae_C368-T01_good_136.610
SRR6049663Rhizomagastrodiae_C368-T01_good_134.970
SRR6049664Rhizomagastrodiae_C368-T10_good_133.400
SRR6049665Rhizomagastrodiae_C368-T10_good_133.400
SRP279888GastroGastrodia elata tuber 64.64
JuvenJuvenile tuber98.63
Mother_GastroMother tuber of Gastrodia elata 73.34
Mother_JuvenMother tuber of Juvenile 89.70