Detail information of GWHGAAEX013953/evm.TU.scaffold_54.182
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|111019368|ref|YP_702340.1| | 1.00E-14 | multicopper oxidase [Rhodococcus jostii RHA1] |
| KOG | KOG1263 | 0 | Multicopper oxidases |
| nr | gi|743879479|ref|XP_010908414.1| | 0 | PREDICTED: monocopper oxidase-like protein SKU5 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q9SU40|SKU5_ARATH | 0 | Monocopper oxidase-like protein SKU5 (Precursor) |
| trEMBL | tr|D7TYL0|D7TYL0_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI35585.3} |
| TAIR | AT5G48450 | 0 | SKU5 similar 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000059 | 4681752 | 4701930 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013953
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module8 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07732.14 | Cu-oxidase_3 | 43 | 156 | 4.80E-40 |
| PF00394.21 | Cu-oxidase | 170 | 322 | 1.80E-42 |
| PF07731.13 | Cu-oxidase_2 | 414 | 541 | 6.50E-26 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0005507 | Molecular Function | copper ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 44.620 |
| SRR2545915 | Juvenile tuber | 55.140 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.800 |
| SRR5643514 | five period of Gastrodia elata | 7.650 | |
| SRR5643515 | five period of Gastrodia elata | 6.640 | |
| SRR5643524 | five period of Gastrodia elata | 6.960 | |
| SRR5643525 | five period of Gastrodia elata | 8.220 | |
| SRR5643528 | five period of Gastrodia elata | 6.320 | |
| SRR5643658 | five period of Gastrodia elata | 8.810 | |
| SRR5643659 | five period of Gastrodia elata | 16.290 | |
| SRR5643660 | five period of Gastrodia elata | 23.610 | |
| SRR5643661 | five period of Gastrodia elata | 16.520 | |
| SRR5643662 | five period of Gastrodia elata | 19.120 | |
| SRR5643663 | five period of Gastrodia elata | 20.100 | |
| SRR5643664 | five period of Gastrodia elata | 23.440 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 20.350 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.830 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 18.630 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 23.900 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 17.320 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 18.190 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 18.710 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 20.130 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.920 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.300 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.350 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.350 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 18.71 |
| Juven | Juvenile tuber | 15.21 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.31 | |
| Mother_Juven | Mother tuber of Juvenile | 9.04 |