Gene detail

Detail information of GWHGAAEX013954/evm.TU.scaffold_54.183

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|186682114\|ref\|YP_001865310.1\|	6.00E-119	DSH domain-containing protein [Nostoc punctiforme PCC 73102]
KOG	KOG0948	0	Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily
nr	gi\|719988056\|ref\|XP_010252210.1\|	0	PREDICTED: superkiller viralicidic activity 2-like 2 [Nelumbo nucifera]
Swissprot	tr\|B9DFG3\|ISE2_ARATH	5.00E-76	DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic (Precursor)
trEMBL	tr\|F6H9P7\|F6H9P7_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB48916.1}
TAIR	AT2G06990	0	RNA helicase, ATP-dependent, SK12/DOB1 protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000059	4703114	4755856	+

Transcript Sequence
>GWHTAAEX013954 GCCAAACCCTAACTTAAACCAAACTGTTACTTTACAGTTAACCAATTACCATTGCTATCCTCGAACCAGACATAGATTTTGATTGCAATGCAAGCCGGTCGAACTTCCTAAATCCCTCTTTTGTACATTTTTCCCGACCGTAGTGCACGTTCACTCCAGCTACCTGCCACTCACCCCTCCTCTCTGGCCGACGGCGGACAGTTTGGTTAGACTTTCCGCTTTAGTTTACGGTTTTTGGTTAAGAATCTGCTCTGTTCGTTTCACTCGCCAGCTCCAAGCGGTGAATTCGTCTAAGGTTAAGTTGGATCTGGCATCAGACAGTTTCTTAAACTCAATCTGAGAGATGGAAATTATCCCAGCTGCAGGCAAGAGGAAGCTGTCTGAAGAAGATGCAGAGGAACGTGCCTCAGCAGCAAATGAAGCTCAAAAGCCTGAAAGTATGGTGAAACGACGAAATATTTCTCGAACTTGCATTCATGAGGTTGCTGTTCCAAATGAATGCAGTTCATCAACGGATGGATCAATTCATGGGACGTTAGAGAATCCTATCTACGATGGGAAAATGGCTAAAACATATCCATTTGAATTAGATCCATTTCAACAAGTTTCTATTGCATGTCTGGAGCGGAATGAGTCCGTCTTGGTTTCTGCTCACACTTCTGCTGGTAAAACTGCAGTGGCTGAGTATGCCATAGCAATGTCTTTTCGGGACAAGCAAAGGGTGATTTATACCTCACCTTTGAAAGCTTTAAGCAATCAGAAATACAGAGAATTGAATCAGGAGTTCTCTGATGTTGGTTTGATGACTGGTGACGTGACACTCTCACCACATGCTAGTTGCCTTGTCATGACAACTGAGATCCTCAGGGCGATGCTCTATAGGGGTACTGAATTACTAAAGGAGGTAGCATGGGTTATTTTTGATGAAATACACTACATGAAAGATCGAGAAAGAGGGGTTGTATGGGAGGAGAGTATTATTTTTATGCCTCCAGCCATCAAGATGGTTTTTCTATCTGCTACCATGTCGAATGCCACAGAATTTGCAGAGTGGATATGCAATTTGCACAAACAGCCTTGTCATGTAGTTTATACGGACTTCAGGCCTACACCTTTACAGCACTACATGTTCCCATTGGGTGGATCAGGTTTGTATCTTGTTGTGGATGAGAATGAGCAATTTAAGGAGGATAATTTTGCAAAGCTGCAGGAGACATTCTCAAAACAGAAGAATCAGGTTGATGGAAACCAGAATGGAAATGCACGTAGTCGAATTGCAAAGGGTGGTACTGCTTCTGCTGGTTCTGACATTTATAAGATTGTGAAGATGATAATGGAGCGAAAATTTGAACCAGTAATAATTTTCAGCTTCAGTAGAAGGGAGTGTGAGCATCGTGCTATGTCCATGGCTAAACTTGACTTCAACTCTGAAGAAGAAAAGGGTATTGTTGAACAGGTTTTTAAAAATGCTATTCTCTGCTTGAATGAGGAGGATAGAAATTTACCAGCTATTCAGCTTATGCTTCCCTTGCTCCAACGAGGCATAGCTGTTCATCATTCAGGACTACTTCCAATAATTAAGGAATTAGTGGAGTTGCTGTTCCAGGAAGGCCTAGTCAAAGCTCTTTTTGCTACTGAAACCTTTGCCATGGGTCTGAATATGCCTGCAAAGACTGTTGTTTTCACTTCTGTGAAAAAATGGGATGGTGACACCCATCGTTACATTGGATCCGGCGAATACATCCAGATGAGCGGAAGAGCTGGTCGTCGTGGGAAAGATGAGCGTGGTGTTTGCATCATAATGATTGATGAGAAGATGGAAATGGCTGTTCTCAAGGACATGGTTTTGGGAAAACCTGCTCCTTTGGTCAGTACCTTCAGGTTGAGTTATTACTCCATTTTAAATTTACTGAGCCGTGCTGAGGGTCAATTTACAGCTGAACATGTTATCAAGAACTCATTCCATCAATTCCAATATGAAAAGTCTTTGCCTGAGATAAACAATAAGATAGCAAAGCTGGAAGCAGAAGCTGCTATGCTTGAACCTTCAGGAGAGGCTGAACTCACTGAGTATCATAATCTTGGACTCGAAATTGCTCAAATTGAAAGAAAAATCATGTCTGAGGTTACCAGACCTGAAAGGATTTTGTATTATCTGGTTCCAGGCAGGCTGGTCAAGGTACGGGATGGTGGAACTGATTGGGGTTGGGGGGTTGTGGTTAATGTGGTAAAAAAGCCTCCTTCCGGAGCAGCATTATCATCTGCACTTGCTGCATCGCGCGGTAGTAATTACGTTGTGGATACTTTACTTCACTGTTCTATTGGCTCAAGCGGCAATGGGTCTCACCAAAAACCATTGCCACCTTGTCCTGGAGAAAGGGGAGAAATGCACGTGGTTCCTGTAACTTTACCTCTTATATCGGGCATCAGTAGCATAAGAATATCATTTCCTCCTGATCTTCGCCCTTCCGAAGCTAGACAAACAGTACTCCTGGCTGTGCAGGAACTACAGAAGCAGTTTCCTCGTGGTCTCCCCAGGTTGAACCCAGTCAAGGACATGGGAATCGATGATCCGGGACTTACTGATTTAATTCATAAGATTGAAGAAATGGAGCAGAAATTATTTGCTCATCCGCTGCATGAGTCTAGCCAAACTGAGAAGCATTACAAAAGGTTTCAAAAGAAAGCTCAGTTGAATCATGAAATTCAGCTTCTTAAGTCCAAGATGAGGGATTCTCAGCTACAAAAGTTCCGCGATGAGCTGAAAAACCGTTCAAGAGTTCTGAAGATTCTTGGCCACATCGATGCCGACTGTGTAGTTCAGCTGAAGGGTCGTGCTGCCTGTCTGATTGACACCGGCGATGAACTTCTTGTCACAGAGCTTATGTTCAATGGTACGTTTAATGAACTCGATCCGCATCAAGTTACTGCTCTTGCAAGCTGCTTTATTCCTGGGGATAAATCAAGTGATAAATCACATTTGAGAGTTGAGCTTGCAAAGCCTTTGCAGCAGCTCCAAGAGAGTGCCAGAAAAATAGCAGAGATACAACGTGAATGCAAATTGGATATAAATGTAGAGGAATATGTCGAATCAACCGTTAGGCCGTATTTGATGGATGTTATTTATTGTTGGTCAAAGGGTGCCACATTTGCGGAGGTGATTGAAATGACTGATATTTTTGAAGGCAGCATTATTCGCCTGGCACGGCGGTTGGATGAATTCTTGAACCAGTTGAAAGCCGCAGCTCATGCTGTGGGGGAGGTCAATCTTGACAAAAAATTTGAAGCAGGCGCTGAAAGTCTTCGGCACGGAATAATGTTTGCCAACTCTTTGTACTTGTAGATCGAAATTACGCCTCTTTCTCTCTGTACTTGTAGGACATTTGAATGTTGGTGGGTGGATTGAGCTACCCTGTTTTGCATTTGGGGCATGTAGGGCTCTTAACTAGGGTTGGGATCAGTAAGGACCTGTTTGAAAATGGTATGTTAGTCCTTCACCATTGTTTTAGCTTTTAAAGGAACTTATATGAATGCTTTCTTTTTAATGGGTTAGTTCAACAAAAGCATTTTAGTTTCAAAATGTATGGTTCAATCTTGT

Network for GWHGAAEX013954

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.28	DEAD	84	230	3.90E-18
PF00271.30	Helicase_C	374	477	4.40E-07
PF13234.5	rRNA_proc-arch	533	796	1.40E-73
PF08148.11	DSHCT	825	994	2.80E-46

Protein Sequence

>GWHPAAEX013954
MEIIPAAGKRKLSEEDAEERASAANEAQKPESMVKRRNISRTCIHEVAVPNECSSSTDGSIHGTLENPIYDGKMAKTYPFELDPFQQVSIACLERNESVLVSAHTSAGKTAVAEYAIAMSFRDKQRVIYTSPLKALSNQKYRELNQEFSDVGLMTGDVTLSPHASCLVMTTEILRAMLYRGTELLKEVAWVIFDEIHYMKDRERGVVWEESIIFMPPAIKMVFLSATMSNATEFAEWICNLHKQPCHVVYTDFRPTPLQHYMFPLGGSGLYLVVDENEQFKEDNFAKLQETFSKQKNQVDGNQNGNARSRIAKGGTASAGSDIYKIVKMIMERKFEPVIIFSFSRRECEHRAMSMAKLDFNSEEEKGIVEQVFKNAILCLNEEDRNLPAIQLMLPLLQRGIAVHHSGLLPIIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDTHRYIGSGEYIQMSGRAGRRGKDERGVCIIMIDEKMEMAVLKDMVLGKPAPLVSTFRLSYYSILNLLSRAEGQFTAEHVIKNSFHQFQYEKSLPEINNKIAKLEAEAAMLEPSGEAELTEYHNLGLEIAQIERKIMSEVTRPERILYYLVPGRLVKVRDGGTDWGWGVVVNVVKKPPSGAALSSALAASRGSNYVVDTLLHCSIGSSGNGSHQKPLPPCPGERGEMHVVPVTLPLISGISSIRISFPPDLRPSEARQTVLLAVQELQKQFPRGLPRLNPVKDMGIDDPGLTDLIHKIEEMEQKLFAHPLHESSQTEKHYKRFQKKAQLNHEIQLLKSKMRDSQLQKFRDELKNRSRVLKILGHIDADCVVQLKGRAACLIDTGDELLVTELMFNGTFNELDPHQVTALASCFIPGDKSSDKSHLRVELAKPLQQLQESARKIAEIQRECKLDINVEEYVESTVRPYLMDVIYCWSKGATFAEVIEMTDIFEGSIIRLARRLDEFLNQLKAAAHAVGEVNLDKKFEAGAESLRHGIMFANSLYL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12598	MTR4, SKIV2L2	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0006401	Biological Process	RNA catabolic process
GO:0003676	Molecular Function	nucleic acid binding
GO:0003724	Molecular Function	RNA helicase activity
GO:0003723	Molecular Function	RNA binding
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	49.220
SRP064423	SRR2545915	Juvenile tuber	44.880
SRP108465	SRR5643513	five period of Gastrodia elata	27.770
	SRR5643514	five period of Gastrodia elata	28.380
	SRR5643515	five period of Gastrodia elata	25.480
	SRR5643524	five period of Gastrodia elata	26.180
	SRR5643525	five period of Gastrodia elata	23.260
	SRR5643528	five period of Gastrodia elata	17.130
	SRR5643658	five period of Gastrodia elata	25.100
	SRR5643659	five period of Gastrodia elata	36.760
	SRR5643660	five period of Gastrodia elata	36.260
	SRR5643661	five period of Gastrodia elata	34.200
	SRR5643662	five period of Gastrodia elata	37.550
	SRR5643663	five period of Gastrodia elata	37.990
	SRR5643664	five period of Gastrodia elata	43.980
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	40.090
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	25.010
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	36.290
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	45.620
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	42.910
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	51.900
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	45.140
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	44.030
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	38.370
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	42.380
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	31.540
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	31.540
SRP279888	Gastro	Gastrodia elata tuber	38.90
	Juven	Juvenile tuber	39.04
	Mother_Gastro	Mother tuber of Gastrodia elata	21.91
	Mother_Juven	Mother tuber of Juvenile	21.10