Detail information of GWHGAAEX013955/evm.TU.scaffold_54.186
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|145588193|ref|YP_001154790.1| | 8.00E-20 | nuclear protein SET [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] |
| KOG | KOG1080 | 0 | Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases |
| nr | gi|672172466|ref|XP_008806324.1| | 0 | PREDICTED: histone-lysine N-methyltransferase ATX2-like [Phoenix dactylifera] |
| Swissprot | tr|P0CB22|ATX2_ARATH | 0 | Histone-lysine N-methyltransferase ATX2 |
| trEMBL | tr|M0S0Z4|M0S0Z4_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P18360_001} |
| TAIR | AT1G05830_2 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000059 | 4812300 | 4847130 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013955
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00855.16 | PWWP | 510 | 591 | 3.00E-12 |
| PF05964.13 | FYRN | 653 | 703 | 2.20E-13 |
| PF05965.13 | FYRC | 712 | 778 | 3.40E-08 |
| PF13831.5 | PHD_2 | 818 | 851 | 1.60E-09 |
| PF13832.5 | zf-HC5HC2H_2 | 862 | 982 | 7.70E-32 |
| PF00856.27 | SET | 1117 | 1223 | 3.90E-15 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SET |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 30.860 |
| SRR2545915 | Juvenile tuber | 39.430 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 21.390 |
| SRR5643514 | five period of Gastrodia elata | 18.040 | |
| SRR5643515 | five period of Gastrodia elata | 16.980 | |
| SRR5643524 | five period of Gastrodia elata | 16.730 | |
| SRR5643525 | five period of Gastrodia elata | 10.610 | |
| SRR5643528 | five period of Gastrodia elata | 9.610 | |
| SRR5643658 | five period of Gastrodia elata | 12.830 | |
| SRR5643659 | five period of Gastrodia elata | 26.410 | |
| SRR5643660 | five period of Gastrodia elata | 32.030 | |
| SRR5643661 | five period of Gastrodia elata | 27.720 | |
| SRR5643662 | five period of Gastrodia elata | 29.530 | |
| SRR5643663 | five period of Gastrodia elata | 27.680 | |
| SRR5643664 | five period of Gastrodia elata | 30.950 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 26.010 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 22.650 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 25.370 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 30.470 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 26.800 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 28.750 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 28.250 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 28.200 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 22.200 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 24.240 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 20.130 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 20.130 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 33.80 |
| Juven | Juvenile tuber | 40.23 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 16.95 | |
| Mother_Juven | Mother tuber of Juvenile | 26.44 |