Gene detail

Detail information of GWHGAAEX013957/evm.TU.scaffold_54.188

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|182415905\|ref\|YP_001820971.1\|	2.00E-42	bile acid:sodium symporter [Opitutus terrae PB90-1]
KOG	KOG2718	4.00E-146	Na+-bile acid cotransporter
nr	gi\|743765787\|ref\|XP_010913121.1\|	5.79E-180	PREDICTED: probable sodium/metabolite cotransporter BASS3, chloroplastic isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q6K739\|BASS3_ORYSJ	7.00E-175	Probable sodium/metabolite cotransporter BASS3, chloroplastic (Precursor)
trEMBL	tr\|M1CTH0\|M1CTH0_SOLTU	2.00E-180	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400074310}
TAIR	AT3G25410	4.00E-146	Sodium Bile acid symporter family

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000059	4880608	4896011	+

Transcript Sequence
>GWHTAAEX013957 CATTGTTACACGCCAATTTAATAATCCTCTTTCCCTTCAATGGCGGCATCAATGCACTGGGGCAGTGCTTCACTGTCCCTACCTGCCGCGGACGGCAGATTCCGGCGAACTTCTTCCGCATATTTTCCATTCTCTCCAAGATTCAGGCTGCAGAGATGCGGAAACGAACGTCCTTTTATGCGTGTGATGGCTTGCTCGACTTCGTGCCCTTTCGAAGGCAGGGTTGGATGGCATCGGCGGGAGGGAACTGTCTCTCTCGTTTCTTTCGGTCTAAACACCGCCTCGTTCATCTCCGGAAATGATAGGGCCGATGATATTTCACAGGCGATTTCAGCGATGCTTCCTTTTGTTGTTGCTACCACTGCTCTTGCTGCGCTCGCGAACCCGTCGACCTTCTCCTGGGTATCGAAAGAATACTATGCTCCTGCTCTTGGAGGGATTATGCTATCTATTGGCCTCAAATTATCCATTGATGATTTTGCATTTGCTTTTCAGAGGCCTTTACCACTTTATGTTGGTTATGTTGCACAATATGTACTCAAGCCACTTTTGGGCTTATTGATAGCAAGGGCATTTAGGATTCCTTCAATATTCTATTCTGGTTTCGTTCTCACTAGCTGTGTAGCTGGGGCTCAACTTTCAAGTTATGCTAGTTTTTTGAGCAAAGGAGACGTGGCATTGAGTATTCTGTTGACCAGCATAACTACCATCTCTTCTGTAGTTGTTACGCCTTTGCTCACCGGCCTTTTTATTGGCTCGGTAGTCTCAATTGATGCAGTTGCAATGTCCAAATCAATCTTGCAGGTTGTGCTTATTCCTGTCACTGCTGGACTCGTTCTCAACACATATGCCAAATCTTTGGTGAATGTTATTCAGCATATAATGCCTATTGTGGCTATGTTCTGTACTTCGCTTTGTATCGGTAGCCCTCTTGCAATAAATAGGAGCCATATTTTGTCTTCAGAAGGTCTCCTACTGCTTCTACCCATTATGTCTTTCCATGTTACGGCGTTTACACTCGGTTATTGGGCATCCAAACTGCCCTTTTTGAGAAAAGAATCGGTGAGCAGAACAATATCGCTCTGCACAGGAATGCAAAGCTCGACAATTGCCGGCCTTCTTGCAACCCAGTTTCTTGGCAGCAGCCATGCAGTCCCTGCTGCTTGCTCTGTGGTGGTGATGGCCATTTTTGGCCTAAGTCTAGCATCTTTCTGGGGTAAAGGATCAAGAGTTAGGGACATCCCTTTGCTTCTCTTTTGTCAACTAGCTCCACTATCTACCCAGAAGGCTCAAAACAGGCGGAGATTTTGGTGAGATATTTTACTTTTGCACAATAGTCATTGGAAAAAGTGAAGTGATGATATATCTAGCTTTAATGTGTACGAGACGGATATCTGCAATGCTCAGTAAGACTAGAATTTAAAGTACTAAAAGGCAAACAATGATGTAATTTATTTTGTTCTTTTGCTGTTTTTGAATCTTGCCATCAAATTATCAAGATTAATGATGATAGCTTCTGCAAGTATAGTGGCATCCTCTTTTCTCTATGACTTTATTTCTAATTTTAACTCTTTTATCTAGTTTTTGATTAATGGGTTGTGAAAGATATCATTTCTTTTAGAAATTGTTTGAGTGGGTGAGAATAAGCGAGTGCCATTTTTTATTCAATGTCTAATATTCTCTGAAACCCTTTTTTGGTCTCTTCATTTGCATTTGCATTTTTTTCTTTCACTGCAGAATGTTTGCAGAAACTGCATGCTGATTTCTCATCCTCAACATTTATTGGAGTGGCAGAAACGCTATTTTTTCTAACCTCGACAGCTTAATATAATGATACATAACCTGACGGAAAGACTTTTGAATAGTGGGAACTTTTCAACCATCAAATTTTTTGGTGCATTTGGTAGTGTGGATTAAATGATAATGCCCTAAATTGCATAAATGAGAAGTGAGTATGAAGGAACTTTAAAAGAAGTTCAAGGAGTTTTAAGCATGGAAAATCAACACAACTAGTATCTCATCAAGCAAATGATGGGGTCGAAGTATATAGAAGGAAAGCCCATATCAGATCACCTAATCAAGTTTTAGGGGATCATCAATTTAGGATGGCCATTAAGTTTGAGGATGAAGCCCAAGGGCATTGAATTCCAGGTACTTTACTTAACTTTCGGAGATCTTTTAAACGTTGTTGCCGAACTCTGCGCCTGATGGAGAGATCATTGTGGAGTTGGTGAAGAGTAGTGTCTTGAACGAGGAGATGAGGAGGAAGTCTCATAATATTTCCACTTATCAACAAAAACTGCTCGTCTCGATGAGAGCAGAAATGCTCCATACCATGATAGAACCAAAGCTGGGGGTTGAATGTATTCAAAATTGGAGTGCTATTATTGTGTCAAAAAGGGTCACATTCAGTCAAGTCACTATTGGAAGTTGCAAAATGGCAGAAATAAAGAGGCTAGAAGAAGAATACTTGCAGAAGCAGTACCTGAAGAGTTTTTGCCTTAGTGTATGACGATGAAACTTGGCTAGCTAAGAGATCACCTAGGTTATCGATAGTGGAGCATCGATGAATGCCACTTGAAGACAAGATAATATTAAGTCATATTTAATCAAAATAAAAATAATCAAACATAAAAGTAAAATATTTAAATATTTAGTCTAGTTTAATTACTACAAGCTAAATATAAAATATAGATAAAATAAAAAAACGTAGTTAGTTCGCACCACTATTTGAACTCAAACTTGGATGCAGCACTAAAAAGGTACTTGTGAAATATTTTATGTTAAAATATCTATCAATAAAATGTACATAACAATCTAATCTTTCTTTGTATTGTATGCCAATTTATGCTTAAAATCTATAAGCAATATGATTGTAGTAAAAAATAAGAAAAGTTAAATTAATCAGCATTGGAAAAAGAGGGAATAGACCAACAACAAAAATAGACAATGGTAATTATGTATTTTAATAAATAAATTATTTAATGTTGCACAAATTTTGGAAAATAATATGAAATTGAGTTGTATATGTGAAACATGATTAGGCATTACATGATTCATCCATAGTTAATTTACATTTGCATTGTGTTATTCTAGTGCCAAATTTTGGCATGTAATTGTTGTTATGGGCATAAGATACATGGGAACTGAGAACGTCTATTCATAGAACTTAATTGCATATAAACTGATTGTCC

Network for GWHGAAEX013957

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01758.15	SBF	129	307	8.50E-33

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	9.830
SRP064423	SRR2545915	Juvenile tuber	7.750
SRP108465	SRR5643513	five period of Gastrodia elata	4.410
	SRR5643514	five period of Gastrodia elata	5.440
	SRR5643515	five period of Gastrodia elata	5.340
	SRR5643524	five period of Gastrodia elata	5.000
	SRR5643525	five period of Gastrodia elata	8.190
	SRR5643528	five period of Gastrodia elata	6.620
	SRR5643658	five period of Gastrodia elata	6.340
	SRR5643659	five period of Gastrodia elata	4.640
	SRR5643660	five period of Gastrodia elata	4.640
	SRR5643661	five period of Gastrodia elata	4.300
	SRR5643662	five period of Gastrodia elata	4.660
	SRR5643663	five period of Gastrodia elata	5.130
	SRR5643664	five period of Gastrodia elata	5.920
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.630
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.360
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.420
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.670
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.250
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	7.850
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	8.430
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.880
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.020
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.490
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.120
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.120
SRP279888	Gastro	Gastrodia elata tuber	8.42
	Juven	Juvenile tuber	9.58
	Mother_Gastro	Mother tuber of Gastrodia elata	6.51
	Mother_Juven	Mother tuber of Juvenile	10.16