Gene detail

Detail information of GWHGAAEX013958/evm.TU.scaffold_54.189

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|560144777\|ref\|YP_008838053.1\|	1.00E-79	pirin [Pandoraea pnomenusa 3kgm]
nr	gi\|721604281\|ref\|XP_010234698.1\|	6.84E-162	PREDICTED: pirin-like protein isoform X2 [Brachypodium distachyon]
Swissprot	tr\|Q9SEE4\|PIRL_SOLLC	1.00E-152	Pirin-like protein
trEMBL	tr\|I1GKX8\|I1GKX8_BRADI	4.00E-162	Uncharacterized protein {ECO:0000313\|EnsemblPlants:BRADI1G01870.1}
TAIR	AT1G50590	9.00E-123	RmlC-like cupins superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000059	4902792	4905270	+

Transcript Sequence
>GWHTAAEX013958 CCTGCCAACCGTCTTCAATAGCTTCCAAAAAGAAAGAAACATTTCATATTCAACGAAGTGGAAGCCATCCTCTCTTCCTCTTCTCTAGAAGCATGCTCTAGCATGTTAATTAGACATTCTTCTTCTTCTTCTTTCATATAAAATCGCAACTTCTCTTCCTGCGAAGCATGCTAACACCTTCATCTTCTCTCCCAAAGAAACAACTTTTTTAAAAAACAGAGCGACGAAGGCTTCATTCACAGCTGCCATGTCCAGCTCTTCGTCCATTCAAATCGGTTGCGAAACGCCGGAGCTTCGGAACCCAAGACACGTGGCTAAAAAATTCTTAGCCAAGCAACAGCACGAAGGTGATGGCGCTACAGTTCGCCGAAGCATCGGAAGACCGGAGTTGAGAAACTTCGACCCATTTCTTCTTCTGGATGAGTTTTCCATTTGTCATCCTGCTGGGTTTCCAGATCACCCTCACAGAGGCTTCGAAACTGTCACATACATGCTTGAGGGCGCCGTTACACACCAAGACTTTTCCGGCCACAAGGGAACTATCAGAACCGGCGATCTTCAGTGGATGACTGCGGGACGAGGAATAGTTCACTCAGAAATGCCGGCCGGCGACGGAGTTCAGAAAGGCCTCCAGCTTTGGATCAATCTCTCCTCCAAACATAAAATGGTTGAACCGAACTATCAAGAGCTACAAAGTAAGGCCATCAGGAGAGCCAACAGGGACGGCGTTGACGTGTGCATCATAGCAGGGGAGGCCTTCGGCATCCACTCACCGGTCCACACGAGGACTCCGACAATGTACCTTGACTTCACCATGAAGCCTGGATCTGAGCTGCGGCAGCGAATTCCGGAGGAATGGAATGCATTCGTGTACATCATTGATGGCGACGGCGTGTTTGGAGATGGAGAATCACCGCCCGTTTCGTGCCACCATGTTCTGATTCTTACCGGAAACGGTGACGGGCTGTGCGTTTGGAACAAGTCAGGGCGGGCATTGCGGTTTGTGCTCATCGGTGGTCAGCCCCTCAATGAGCCAGTGGTTCAGTACGGCCCGTTTGTGATGAACTCTCAGAAGGAGATACAGCAGACTTTTGAGGACTATAGGCTTGGGAAAAATGGCTTTGAGAAGGCCGAGAAATGGAGCTCAGCACCCTCTGTTAGGGACTGATGATTCAGAGATCTATGGATACTAAACTCTCAGCTGCCTTGATTAATGCCTCTGGTGTTTTGCTCTTTATGTTTCCTCGCTTCTGCTGTTGGAGCCAATTCTGTAATTGTTTATGAGAAGTGATTCTCAGTCGTAAATTTAGAACGGAATGCATGATTCTGTTTTTATCTAATAAAAACGCGGGTGCGGTATTCATAATCATTATGCGAGGCCTATTATCACTGTTGCATTTTGGCTGATTTGGTCTAACACTTGTTCAGGAGGTAGGTGAAGTAAAACTCTATAAAGTTGGGAGTTTTTGAAGCGTCAACTGAGTACATCATTTGGGAGTTACAAACAACCCTCACTCGTTACTTCAAAAATGCAAGCTGAGTGCATTCTGACTGCTAAGTGCTAAGCCTTCGCTTTTATCTCGAGTCTGCTCTGAGTGTGAAAAAAACCCTAATCCCGCCGTTACACCTTCGTGTTCGACTCATGTTTATAACATCCGTCCGAGCGTCTCATTGACTCATTTCGACGTTCAAACCGCCAAGTATTTCGTCACTCCACTAAAGTCATTTTTTGTGGTTCTCCAGTTCGACAGGTTCATGGATGTGACGCGCAACTGTTTTCAAATTAGCGCAAAAACTTCATCATCTTTTCACATTCTCCGGCTTCGCCAGATACAATTTTATTTGAGATATGATTTTTCAACTTTTGCGGATATTGGTAATGATAAGTTTATATATGAATTAATTATATGGGAAGAAATTCTCTTTGCCTTTGATTTATATGAGAATGTTTTTCTATATTTGGTTTATATGAG

Network for GWHGAAEX013958

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02678.15	Pirin	38	132	1.30E-32
PF05726.12	Pirin_C	185	291	4.50E-33

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	12.680
SRP064423	SRR2545915	Juvenile tuber	6.960
SRP108465	SRR5643513	five period of Gastrodia elata	20.600
	SRR5643514	five period of Gastrodia elata	7.040
	SRR5643515	five period of Gastrodia elata	19.060
	SRR5643524	five period of Gastrodia elata	10.660
	SRR5643525	five period of Gastrodia elata	6.710
	SRR5643528	five period of Gastrodia elata	11.250
	SRR5643658	five period of Gastrodia elata	2.130
	SRR5643659	five period of Gastrodia elata	0.490
	SRR5643660	five period of Gastrodia elata	0.390
	SRR5643661	five period of Gastrodia elata	0.620
	SRR5643662	five period of Gastrodia elata	0.210
	SRR5643663	five period of Gastrodia elata	0.050
	SRR5643664	five period of Gastrodia elata	0.360
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	23.930
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	40.000
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	49.020
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	22.990
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	37.350
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	39.170
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	34.780
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	39.050
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	26.590
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	36.270
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	57.830
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	57.830
SRP279888	Gastro	Gastrodia elata tuber	1.17
	Juven	Juvenile tuber	4.38
	Mother_Gastro	Mother tuber of Gastrodia elata	211.14
	Mother_Juven	Mother tuber of Juvenile	141.89