Detail information of GWHGAAEX013963/evm.TU.scaffold_54.193
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3205 | 9.00E-84 | Rho GDP-dissociation inhibitor |
| nr | gi|695068715|ref|XP_009381310.1| | 8.94E-104 | PREDICTED: rho GDP-dissociation inhibitor 1-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9SFC6|GDIR_ARATH | 3.00E-84 | Rho GDP-dissociation inhibitor 1 |
| trEMBL | tr|M0RMB4|M0RMB4_MUSAM | 3.00E-104 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P28900_001} |
| TAIR | AT3G07880 | 9.00E-84 | Immunoglobulin E-set superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000059 | 5013976 | 5015949 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013963
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02115.16 | Rho_GDI | 37 | 224 | 4.40E-75 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12462 | ARHGDI, RHOGDI | Vasopressin-regulated water reabsorption | map04962 |
| Neurotrophin signaling pathway | map04722 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005094 | Molecular Function | Rho GDP-dissociation inhibitor activity |
| GO:0005737 | Cellular Component | cytoplasm |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.970 |
| SRR2545915 | Juvenile tuber | 10.740 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.860 |
| SRR5643514 | five period of Gastrodia elata | 12.350 | |
| SRR5643515 | five period of Gastrodia elata | 10.300 | |
| SRR5643524 | five period of Gastrodia elata | 8.890 | |
| SRR5643525 | five period of Gastrodia elata | 7.170 | |
| SRR5643528 | five period of Gastrodia elata | 7.090 | |
| SRR5643658 | five period of Gastrodia elata | 5.060 | |
| SRR5643659 | five period of Gastrodia elata | 6.710 | |
| SRR5643660 | five period of Gastrodia elata | 5.850 | |
| SRR5643661 | five period of Gastrodia elata | 6.290 | |
| SRR5643662 | five period of Gastrodia elata | 5.790 | |
| SRR5643663 | five period of Gastrodia elata | 7.330 | |
| SRR5643664 | five period of Gastrodia elata | 4.690 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.800 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 16.360 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.790 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.910 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.150 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.040 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.200 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.470 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.620 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.600 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 21.320 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 21.320 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.63 |
| Juven | Juvenile tuber | 8.06 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 17.50 | |
| Mother_Juven | Mother tuber of Juvenile | 9.14 |