Detail information of GWHGAAEX013964/evm.TU.scaffold_54.194


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|294507219|ref|YP_003571277.1|5.00E-20protoporphyrinogen oxidase [Salinibacter ruber M8]
KOGKOG12767.00E-49Protoporphyrinogen oxidase
nrgi|88862008|gb|ABD52908.1|1.96E-54mitochondrial protoporphyrinogen oxidase long form [Amaranthus tuberculatus]
Swissprottr|O24164|PPOM_TOBAC2.00E-52Protoporphyrinogen oxidase, mitochondrial
trEMBLtr|Q0NZP2|Q0NZP2_AMATU7.00E-55Mitochondrial protoporphyrinogen oxidase long form {ECO:0000313|EMBL:ABD52908.1} (Fragment)
TAIRAT5G142207.00E-49Flavin containing amine oxidoreductase family

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005950180765037604+
Transcript Sequence

Network for GWHGAAEX013964

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module8

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01593.23Amino_oxidase251303.20E-23
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00231PPOX, hemY Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Porphyrin and chlorophyll metabolismmap00860

Gene Ontology

GO term OntologyName
GO:0055114Biological Processoxidation-reduction process
GO:0016491Molecular Functionoxidoreductase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms13.830
SRR2545915Juvenile tuber17.350
SRP108465SRR5643513five period of Gastrodia elata4.720
SRR5643514five period of Gastrodia elata2.170
SRR5643515five period of Gastrodia elata4.150
SRR5643524five period of Gastrodia elata5.170
SRR5643525five period of Gastrodia elata2.930
SRR5643528five period of Gastrodia elata2.260
SRR5643658five period of Gastrodia elata3.510
SRR5643659five period of Gastrodia elata7.680
SRR5643660five period of Gastrodia elata4.790
SRR5643661five period of Gastrodia elata5.220
SRR5643662five period of Gastrodia elata4.350
SRR5643663five period of Gastrodia elata5.180
SRR5643664five period of Gastrodia elata2.710
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_16.450
SRR6049655Rhizomagastrodiae_C368-T10_good_112.430
SRR6049656Rhizomagastrodiae_C368-T07_good_18.300
SRR6049657Rhizomagastrodiae_C368-T07_good_16.620
SRR6049658Rhizomagastrodiae_C368-T04_good_15.710
SRR6049659Rhizomagastrodiae_C368-T04_good_13.570
SRR6049660Rhizomagastrodiae_C368-T01_good_16.840
SRR6049661Rhizomagastrodiae_C368-T04_good_15.770
SRR6049662Rhizomagastrodiae_C368-T01_good_13.770
SRR6049663Rhizomagastrodiae_C368-T01_good_14.730
SRR6049664Rhizomagastrodiae_C368-T10_good_17.390
SRR6049665Rhizomagastrodiae_C368-T10_good_17.390
SRP279888GastroGastrodia elata tuber 2.24
JuvenJuvenile tuber1.73
Mother_GastroMother tuber of Gastrodia elata 0.35
Mother_JuvenMother tuber of Juvenile 0.91