Gene detail

Detail information of GWHGAAEX013970/evm.TU.scaffold_54.203

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1327	Copine
nr	gi\|672126503\|ref\|XP_008786705.1\|	PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Phoenix dactylifera]
Swissprot	tr\|Q9LY87\|RGLG2_ARATH	E3 ubiquitin-protein ligase RGLG2
trEMBL	tr\|M0U4K3\|M0U4K3_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P29460_001}
TAIR	AT5G14420	RING domain ligase2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000059	5174142	5200351	+

Transcript Sequence
>GWHTAAEX013970 AATTCTTAAAACCATCATCTAATTATTCCTTTTATAACAACATGCCAACAAAATAATTAAATATAGATCATTTATTGTTTGATAAAAATAGGAGCAGAAACTTGAGTAAAAAAATAATACTAGCTTAGTAAGAATCTAAAGCTTAACTGTCATACGGATAATTAACCAAAACATTTTATTATTATTAATTTTTTGTTATTGTTCTTTGGAATCTTTCAGTTCTAACAGACGTCCCGTTTCTTTCTTTTTAACTCTAGTAAAACTGCAAGTCTTTGTCACAGGGGAAGATAAAAAAGATGAAAAAAACAATGGCAAAGGGCGAATCCGTCACGTGCGGGTTCTGGTGCTGTAGAGAGGCTTCTCCTCCGTTTTATTCCGATTCGTTCCATTAGAATTTCTCAGAGTTCAATGAACGAAGACGTGTAAAACCTGCCAGGTTTAGAATATTTAGGGGATATGGGCGGATGTGGAGGTTCATTCTGCTGCCGCCGCCGTCTTTAATTCTCATTTGTAGTTCACAGCGCCTCTGCCAAAATACCCTTTTCTTGATTTTCTATCCTCTCTTTCTCCGTTCAATGTTCTCAAAATCGATTTTTTTGGGATAAGCTTGCGAAGTGATTCCGTTGCTGGATCTCTTTTTGGTGAGATTCTGTTACAGTACTTGATATTGATGGGGGGCAAAAATTCCTCAGAGTCAAGGAGAAGGGCCATCAGCCGCCCCTCTTCTTTCAGTCATCAGAACCACTCCCAAGATCACCAAGGGAGTTATCCCTACTCCAGTGAAATGCCATATTCTCAGAATTATTCTCCTCCTTTTGCTCCTCCTCAAATTTATCATACTTCAGCTGAGGCCTACCCTCCCAACCAGTCTTTTTCAGCTTCACATGCATACCCTCCAGAAGGATACCACCCAAAGCCTTCGAATTATCATCAACCATCTCAGTCACAATCCTCTTCTTCTGCTTCGTCAACCACAACGCCTCAATTGCCCAGGCTGGATAGACGGTATTCCAGGATTTCTGACAATTACAAGTCCTTGGATGAGGTTACTGAAGCTCTTTCTCAAGCTGGCCTTGAATCTTCCAATCTTATTGTTGGTATTGATTTCACCAAAAGCAATGAGTGGACAGGTAAGCACTCATTTAACCACCGAAGTTTGCATCACATCAGTGATGGACCAAATCCTTATGAGCAAGCAATCTCAATAATTGGAAAGACGTTATCAAAATTTGATGAAGATAACTTGATTCCATGCTTTGGGTTTGGAGATGCATCAACACATGATCAAGATATCTTTAGTTTCCATCCGTATGAGAGACCTTGTAATGGGTTTGCTGAAGCCCTTTCAAGATATCGAGAAATTGTTCCACACCTGCGGTTGGCTGGACCGACATCTTTTGCTCCAATAATTGAAATGGCAATGACCATTGTTGAAGACAGTGGTGGGCAATATCATGTTTTATTGATAATTGCTGATGGTCAGGTAACAAGAAGCGTTGATACTGAAATGGGGCAGCTTAGCTCTCAGGAAAAGAAGACTGTTGATGCTATTGTTAAAGCTAGTGAATTCCCTTTATCTATCATCCTGGTTGGTGTTGGAGACGGGCCTTGGGACATGATGAAGGAATTTGATGATAATATTCCTGCTAGATCTTTTGATAATTTCCAGTTTGTGAATTTCACTGAAATCATGTCGAAGAACATAAGTCAGACGAGAAAAGATACAGAGTTTGCTCTTGCAGCTCTGATGGAAATCCCTTCTCAGTACAAAGCAACATTGGAACTTGGGATATTGGGTCGAAGGAGCTTTAAGTCTCCAGAAAGGATCCCTCTTCCACCACCAACTGGAACTTGTAGTAGCCCATCTTCTACTGGCTACAAAACTTTTCATTCGACTTCTTTTCCGCAAAGGGAGCCTTCTCCAGTTGCTTATAAACCTCAACCAAGCACAACTACACCTGCTTATAGTTCCTTGTTTGATAACCAGGTGTGTCCGATATGCCTTACAAATCCTAAGGACATGGCTTTTGGCTGTGGTCATCAGACATGCTGTGAATGCGGATCGAGCCTTCAGACATGTCCAATTTGCCGCAGCGAGATCCAAACCAGAATAAAGCTCTACTGACAACAGATGATTGAGGCTTCAGAAGAGCATGGCATTGGATCACAGAAAAGATGTACAGCTTTAGTGCCTATTGCTCTTTAGTAGATGATTTGGTTTTTTCTTTTCATGCAGGCTGGTTTGAAATATAAGAACAATTAGCTGTTGCAAGGATGGATTTCTAAGGAATCGAGTAATAGTTTTTTTACTCTTAATTTTATTTTATTTTTGGTTATGCTGTGAAAAATATTATTTTATTCTTATGTCTGCTCAAGTGAGGTTCCATGGCATTCTATATCATTCTCTTCTTATATAATGTATTATATAGAGAAGGGGGTAAATGACTTTAAATAATCACTTCATTTCATTTTATTCATGTAATAGAAACTTTATGATACCCCATCATGAAGCAATAAGTAGTATGAAATAGTAATTAATGGATGAGGTGATAGCTGCCTACTTTTTAAAAAGAAG

Network for GWHGAAEX013970

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07002.15	Copine	162	376	2.80E-74
PF13920.5	zf-C3HC4_3	438	479	5.30E-09

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	52.900
SRP064423	SRR2545915	Juvenile tuber	44.630
SRP108465	SRR5643513	five period of Gastrodia elata	31.460
	SRR5643514	five period of Gastrodia elata	27.200
	SRR5643515	five period of Gastrodia elata	30.030
	SRR5643524	five period of Gastrodia elata	29.550
	SRR5643525	five period of Gastrodia elata	47.430
	SRR5643528	five period of Gastrodia elata	65.990
	SRR5643658	five period of Gastrodia elata	52.670
	SRR5643659	five period of Gastrodia elata	33.930
	SRR5643660	five period of Gastrodia elata	33.400
	SRR5643661	five period of Gastrodia elata	31.290
	SRR5643662	five period of Gastrodia elata	34.640
	SRR5643663	five period of Gastrodia elata	31.990
	SRR5643664	five period of Gastrodia elata	33.950
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	27.840
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	32.820
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	27.230
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	35.480
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	30.680
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	30.820
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	31.510
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	28.960
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	23.160
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	27.430
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	27.170
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	27.170
SRP279888	Gastro	Gastrodia elata tuber	49.72
	Juven	Juvenile tuber	51.70
	Mother_Gastro	Mother tuber of Gastrodia elata	58.60
	Mother_Juven	Mother tuber of Juvenile	47.48