Gene detail

Detail information of GWHGAAEX013971/evm.TU.scaffold_54.204

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743806776\|ref\|XP_010927806.1\|	1.46E-119	PREDICTED: F-box protein At5g07610-like [Elaeis guineensis]
Swissprot	tr\|Q9FGY4\|FB341_ARATH	5.00E-17	F-box protein At5g49610
trEMBL	tr\|J3L6D0\|J3L6D0_ORYBR	1.00E-93	Uncharacterized protein {ECO:0000313\|EnsemblPlants:OB01G47860.1}
TAIR	AT5G49610	2.00E-16	F-box family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000059	5203264	5205402	+

Transcript Sequence
>GWHTAAEX013971 GTGCTTACGACAAAGCATCAAAAGTAACTTAGTCTCTCCCTCCAGGATTCCTCCATTGGATGCTTGCACAACGGAAAGGAACTGAACAAAGGTAAGAGATCAAAGATGCAGCAAGATGATCCTTATGGCGTCAGACTGACAGATGATTTACTCATAGAAATCCTGACCAGGCTTCCGGTGAAGTCTTTCTACCGCTGCAAATGCGTGTCGAGATCTTGGCGGCGGCTCATCGGCGACAGCTATGTGTCGGCGAGGCTTCCGCCGATTGTGTCGGGGGTGTTTTACCGGCGTAGCGGCTGCAGTGAGCAGCTGCGTCTTGAGCCGAGATACGGCTGCAACTCCGGCGGCAGTTTTCTGGAGGCGGACCTTAGCTACCTCCCCTTCCGCGGCAGCTCCAGCATCATAGACTTCAGCGACGGCCTCCTCCTCTTCTACAGCACCATCCCCTCTGCTTACCATGTGTGCAATCCCACCACAAGAAGATGGGCGCGACTCCCCCGCCCAAGCAACAAGAGCACCCTCTCGGTCCTGGCCTTCGATGCTTCCCGATCGCCCCATTACAAGGTGGTTTGCTTTGGCGGTTGGCAGGCAAGAGGGGGGCGGCTAGAGATTTTCTCATCGGAGACGGGCGGGTGGATGGAGCACGGTCCAATCGATTGGGGGACGGACACCGGGAAGCTCTCGGCCTCTATGCATTACTTTGGGGGAGTTCTTTATGTCATCGCCTATCCCGGAAATGTGGCCTGCATTGATCTTGAGAAGATGAGGTGCAGTGTGATTGAGCTGCCGGAGGAGATGAAGGATGCTACTTTGGGGAATTCCGGTGGGTTTCTCCGCTGCGCAATGCGAGATGCCGAGGAAATGAGGATCTGGGCTCTGAGGGATTCGAAATGGGAGTTGAAGAGCAGGGTTGGAATTAAGGGGATACTGGAATGGAATCGCAAGGCCTTTGGGGATGTTCTGAACCATGGCCAGCTTAATTTTTTGGCTTTTCATCCCAAGGAAGAGGTGGTTTACTTTTGGGTTATGGGAAGATTGGTGTCTTTGGATCTCCGTAAGGAGAGATTGAGGATGGTTTGTGAGATGGGAGCAGAGGAGGAGGAGGAGGAGAGGGTTCAGTTGATTCAGATTTGGCTGTTTCCGTTCTCAAACTGTGTTTCTGATTCCTTGGCATGACAAAGTATACTGCTCAAAGATCTAGAGAAATATATATAAAAATATGTCCAAAATTTAAATTTAATAAAAAACTATTAGTGCTTATAGATTATCAGTGTTTATTTTGAAATAAACGAGTTTTTCATTTAAAATTAATTTTGTGTTAATATATAGAAAATCGATGAAATTGAGCTACTCCCGAATTGAGCAGCCGAGCAAAAAAGAAGGAATCCAGCGGCTTACTCAGCGTCCTCTCCGGTGAAGTTAGATTTGTTCGAACATGCGTCTACAGTGAAGGAGTGGAGGAGGTGTATCTTCTCCTTCCATTGCAAAAATAGAAATGATTTTGTTAAACTTAAAAAATTTGAAAAATTTGTAGGAGTATTGCTACACTTACACATTAGTATACACTAAAATATA

Network for GWHGAAEX013971

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.32	F-box	10	44	3.70E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.850
SRP064423	SRR2545915	Juvenile tuber	3.430
SRP108465	SRR5643513	five period of Gastrodia elata	1.920
	SRR5643514	five period of Gastrodia elata	4.410
	SRR5643515	five period of Gastrodia elata	2.460
	SRR5643524	five period of Gastrodia elata	4.040
	SRR5643525	five period of Gastrodia elata	88.920
	SRR5643528	five period of Gastrodia elata	59.710
	SRR5643658	five period of Gastrodia elata	115.750
	SRR5643659	five period of Gastrodia elata	0.640
	SRR5643660	five period of Gastrodia elata	0.410
	SRR5643661	five period of Gastrodia elata	0.280
	SRR5643662	five period of Gastrodia elata	1.570
	SRR5643663	five period of Gastrodia elata	1.090
	SRR5643664	five period of Gastrodia elata	2.530
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.400
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.970
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.000
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.140
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.070
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.400
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.550
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	9.100
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.040
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.840
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.130
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.130
SRP279888	Gastro	Gastrodia elata tuber	4.39
	Juven	Juvenile tuber	0.49
	Mother_Gastro	Mother tuber of Gastrodia elata	17.36
	Mother_Juven	Mother tuber of Juvenile	3.96