Detail information of GWHGAAEX013974/evm.TU.scaffold_54.209
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|427716054|ref|YP_007064048.1| | 1.00E-66 | Octanoyltransferase [Calothrix sp. PCC 7507] |
| KOG | KOG0325 | 2.00E-71 | Lipoyltransferase |
| nr | gi|743856607|ref|XP_010941903.1| | 9.41E-118 | PREDICTED: plastidial lipoyltransferase 2-like isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q948J9|LIP2P_ARATH | 2.00E-110 | Plastidial lipoyltransferase 2 |
| trEMBL | tr|A0A078GD36|A0A078GD36_BRANA | 4.00E-114 | BnaA08g12720D protein {ECO:0000313|EMBL:CDY23274.1} |
| TAIR | AT4G31050 | 2.00E-71 | Biotin/lipoate A/B protein ligase family |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000059 | 5283351 | 5285039 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013974
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03099.18 | BPL_LplA_LipB | 103 | 208 | 4.50E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03801 | lipB | Metabolic pathways | map01100 |
| Lipoic acid metabolism | map00785 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009249 | Biological Process | protein lipoylation |
| GO:0006464 | Biological Process | cellular protein modification process |
| GO:0033819 | Molecular Function | lipoyl(octanoyl) transferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 13.110 |
| SRR2545915 | Juvenile tuber | 8.740 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.980 |
| SRR5643514 | five period of Gastrodia elata | 12.990 | |
| SRR5643515 | five period of Gastrodia elata | 10.250 | |
| SRR5643524 | five period of Gastrodia elata | 11.370 | |
| SRR5643525 | five period of Gastrodia elata | 17.010 | |
| SRR5643528 | five period of Gastrodia elata | 11.370 | |
| SRR5643658 | five period of Gastrodia elata | 14.820 | |
| SRR5643659 | five period of Gastrodia elata | 14.900 | |
| SRR5643660 | five period of Gastrodia elata | 15.700 | |
| SRR5643661 | five period of Gastrodia elata | 16.040 | |
| SRR5643662 | five period of Gastrodia elata | 14.870 | |
| SRR5643663 | five period of Gastrodia elata | 15.140 | |
| SRR5643664 | five period of Gastrodia elata | 14.300 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.060 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.450 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 19.270 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.290 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 12.580 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 11.240 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.290 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 14.890 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 19.980 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.580 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 15.030 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 15.030 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.62 |
| Juven | Juvenile tuber | 9.73 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 10.45 | |
| Mother_Juven | Mother tuber of Juvenile | 5.85 |