Detail information of GWHGAAEX013979/evm.TU.scaffold_54.215


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG16772.00E-08CCCH-type Zn-finger protein
nrgi|573963603|ref|XP_006663936.1|1.46E-09PREDICTED: zinc finger CCCH domain-containing protein 65-like isoform X2 [Oryza brachyantha]
Swissprottr|Q2QTY2|C3H65_ORYSJ4.00E-10Zinc finger CCCH domain-containing protein 65
trEMBLtr|J3NCM3|J3NCM3_ORYBR5.00E-10Uncharacterized protein {ECO:0000313|EnsemblPlants:OB12G17310.1}
TAIRAT5G185502.00E-08Zinc finger C-x8-C-x5-C-x3-H type family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005954850765497105+
Transcript Sequence

Network for GWHGAAEX013979

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module7

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00642.23zf-CCCH38614.10E-06
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC3H

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046872Molecular Functionmetal ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.000
SRR2545915Juvenile tuber0.000
SRP108465SRR5643513five period of Gastrodia elata4.620
SRR5643514five period of Gastrodia elata4.180
SRR5643515five period of Gastrodia elata5.630
SRR5643524five period of Gastrodia elata5.590
SRR5643525five period of Gastrodia elata8.480
SRR5643528five period of Gastrodia elata8.260
SRR5643658five period of Gastrodia elata7.800
SRR5643659five period of Gastrodia elata5.330
SRR5643660five period of Gastrodia elata8.220
SRR5643661five period of Gastrodia elata6.980
SRR5643662five period of Gastrodia elata3.940
SRR5643663five period of Gastrodia elata5.480
SRR5643664five period of Gastrodia elata6.210
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_12.810
SRR6049655Rhizomagastrodiae_C368-T10_good_113.610
SRR6049656Rhizomagastrodiae_C368-T07_good_15.000
SRR6049657Rhizomagastrodiae_C368-T07_good_17.070
SRR6049658Rhizomagastrodiae_C368-T04_good_12.590
SRR6049659Rhizomagastrodiae_C368-T04_good_12.030
SRR6049660Rhizomagastrodiae_C368-T01_good_12.040
SRR6049661Rhizomagastrodiae_C368-T04_good_12.190
SRR6049662Rhizomagastrodiae_C368-T01_good_10.940
SRR6049663Rhizomagastrodiae_C368-T01_good_10.230
SRR6049664Rhizomagastrodiae_C368-T10_good_16.940
SRR6049665Rhizomagastrodiae_C368-T10_good_16.940
SRP279888GastroGastrodia elata tuber 5.46
JuvenJuvenile tuber9.86
Mother_GastroMother tuber of Gastrodia elata 5.37
Mother_JuvenMother tuber of Juvenile 8.60