Gene detail

Detail information of GWHGAAEX013981/evm.TU.scaffold_54.218

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672144320\|ref\|XP_008796059.1\|	1.69E-29	PREDICTED: B3 domain-containing protein Os02g0598200-like isoform X5 [Phoenix dactylifera]
Swissprot	tr\|Q6K5K2\|Y2982_ORYSJ	3.00E-26	B3 domain-containing protein Os02g0598200
trEMBL	tr\|J3LEG2\|J3LEG2_ORYBR	3.00E-25	Uncharacterized protein {ECO:0000313\|EnsemblPlants:OB02G30290.1}
trEMBL	tr\|J3LEG2\|J3LEG2_ORYBR	2.00E-10	Uncharacterized protein {ECO:0000313\|EnsemblPlants:OB02G30290.1}
TAIR	AT3G53310	1.00E-08	AP2/B3-like transcriptional factor family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000059	5556352	5565626	+

Transcript Sequence
>GWHTAAEX013981 ATGCCAACGCCGCAGAAGGTGGAAACTAGAGGGAGGAAGAAGAAACAAATACCCTTCTTAGAATGCTCGGCGACTCCCTCTAAGGTGAAACGTGGGAGGAAGCCCCTATCTCCTCCTCCGCGGCATGGTGCTACTCCTGTTCCATTCTCATTCTTTAAGGTTTTGATCGGGAATTTCAAAGATGTACTGTTTATTCCTCCAATAGCAGCATTTTCCTTGAACAGCTTGGCTGAGAAGTATGTTTATTTGGAAGATGCAACTGGAAAGTTCTGGAACATTAAGATGTCTGTGATTAATGGTTCATTAGCTTTTTATAACGGATGGCATGATTTTATCTCTGACCATTCTATAACGACAGGGGAGTTTGTTTTATTTACTTACACTGGCGGATTATTATTTACAGTGCGAATTTTTGGACTTAGCGCCATGGAGCGAGTGGCTTTTCAGTTGAAAAAAAAGCGAGGTAGGTGCACAAGGGAAAGTTGCACTGCTGAATTAAAACTTGATAATGCTTTATTTAATGAGAGGTATAAAGCATCTAAAGCTCCAAAAGAGGAGAATAGCCCATCTGGAGCTGAAGTTCTGAAAAGCTTAAAGAAGAGGAAAAAGCATGCTAAGTGTGATGTCTTTAAAGTAATTGAAAATGATTCCATCGCTGAAAGAGCTCAAAAAATTCCAAAAGTGACTGAGATACATAATGATTTAAACTATAAAGAATCTGAAAATAATATAGTTTATGATTCAGAGCAAACACACCATAGAAACAGTTGTGTTACAGTTGGGGGATTAAGTGCAGTATCTCCTACTGTGCTTGCAAAGTCGGGCATAGACAACTTTGAAGCAATTACATGTAAAAGCCTTAGAAATGGGACGAGCATAACTGAGGAAGGAGCTGTTCTTCTGCATAGTTATGAAGGTCTGCTAACATACCGGACTGATGAAAATCCTGATGCCATGAGTAAAGCTGCTAGCTGGACTGTTAAAGCACATTCTGATATTAAAGAGGGATCAATTGAAATGAGTTGTTCTCAAGTGCAGATGAATGAAGCCCATGATAAAATTATAAACCATGAGAAGATAGAACAAGTCGATTCGCATGACTTGGAAATTATTGATAGCGAGCCATATGATGACGAAACAGCTTCTCTATCTAAGCACAAACATGCAGACTGCAATCTTAAATTGGATTTTGATCTGATTGAACCTGAGCTAATTGCTGATAAAGTTTTTATCTCAGAAAATGGAATATGCTACACCACTCTTGATGAAAAGTCTACAGAACATGCAATTGGAACTTTCTTGGATGTAAATGAACAGAAAGAACCGATAGACCAAAATGATCATGCAACCAATGATAAAGACAATTTGATTTCAATCAATGAAGAATATGGAGTTCATCATACCAATGGTAGCCTATCTTTAGTCAAAAGTGGCCTTCGAAGCAGTACAAAAGCTCACGTGCGCAATAAGAGAAGTCTAGTAAAAAATAATGAAACTGACTTGGTTGCTATTCCATTATCCAGTTACTTAAGTTTTGAAGTTTGCTTATCTGATGACGTTCAGTCCTTTATTGAATTACCGAAAGAACTAGTTGGCCATATTAGCAAATTGAAATATGATAGGAAAATTGTCGTGGTTCAGGATCTGTCCATGAGGTGCTGGCCAGTCTTGTATCACCAGACCCTCAATTTTGTGGGATTTATTGGCGGTTGGATTGATTTTGTCAGAGCAAATAATATTTGTCAAGGCGATACCTGCAAGTTTGACCTTGTTAATAAGATGGAACCTATATTTCATGTAAACGTCATGAAAGCAGAAGCATCCACCTTTGATGAAAAAGAAAGCTCGCCTTGATCTTCAATATATAAGAAGAGAGAGGTTTGATGTTCGTATCTTATATCAATTACTGGGGAGGATTTTGTCCAGCATGGTAATGTTCCAGTCTGACGTACCCCTGATTCCTCAACTAAGCATATTTATGTTGCAAGTTGGCTCCTGAATGCATTTTTTATAACTTGAGTGTTTCTTGGGAACTAATGCAATTATTATTAATTAATATTATTAGTATATGCAATTTTTTTTATTTTTGGTTCAACATTAATGAGCTCTTGGCATAGCTACGAATTTGTTATCTCATCATATCACGGGTTGAAGTTTATTTTCTTTCAAAATAAAAACTTGTAAATAGTATTGTGGCTTAACAGTAGAGTTACTGAGTTTTGATCTATCAAAAATTCAAATTCTTTCTTAAATTATGCAATT

Network for GWHGAAEX013981

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.20	B3	51	138	7.10E-09
PF02362.20	B3	517	600	1.70E-08

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	19.660
SRP064423	SRR2545915	Juvenile tuber	18.910
SRP108465	SRR5643513	five period of Gastrodia elata	7.070
	SRR5643514	five period of Gastrodia elata	8.830
	SRR5643515	five period of Gastrodia elata	6.790
	SRR5643524	five period of Gastrodia elata	9.420
	SRR5643525	five period of Gastrodia elata	5.940
	SRR5643528	five period of Gastrodia elata	5.540
	SRR5643658	five period of Gastrodia elata	4.400
	SRR5643659	five period of Gastrodia elata	12.370
	SRR5643660	five period of Gastrodia elata	13.480
	SRR5643661	five period of Gastrodia elata	12.560
	SRR5643662	five period of Gastrodia elata	9.120
	SRR5643663	five period of Gastrodia elata	9.810
	SRR5643664	five period of Gastrodia elata	8.150
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.550
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.890
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	13.120
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	11.180
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	10.050
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	10.680
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	13.230
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	10.900
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	14.050
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	16.680
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.600
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.600
SRP279888	Gastro	Gastrodia elata tuber	8.91
	Juven	Juvenile tuber	5.37
	Mother_Gastro	Mother tuber of Gastrodia elata	4.10
	Mother_Juven	Mother tuber of Juvenile	3.15