Detail information of GWHGAAEX013992/evm.TU.scaffold_55.8
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1870 | 0 | Ubiquitin C-terminal hydrolase |
| nr | gi|672183204|ref|XP_008811872.1| | 0 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 9-like isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q9ZSB5|UBP10_ARATH | 0 | Ubiquitin carboxyl-terminal hydrolase 10 |
| trEMBL | tr|M0SQZ4|M0SQZ4_MUSAM | 0 | Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435} |
| TAIR | AT4G10590 | 0 | ubiquitin-specific protease 10 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000056 | 166117 | 225720 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013992
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF06337.11 | DUSP | 41 | 141 | 2.90E-21 |
| PF00443.28 | UCH | 336 | 937 | 7.90E-82 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | USP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016579 | Biological Process | protein deubiquitination |
| GO:0006511 | Biological Process | ubiquitin-dependent protein catabolic process |
| GO:0004843 | Molecular Function | thiol-dependent ubiquitin-specific protease activity |
| GO:0036459 | Molecular Function | thiol-dependent ubiquitinyl hydrolase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 112.660 |
| SRR2545915 | Juvenile tuber | 72.750 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 39.330 |
| SRR5643514 | five period of Gastrodia elata | 36.650 | |
| SRR5643515 | five period of Gastrodia elata | 37.610 | |
| SRR5643524 | five period of Gastrodia elata | 38.060 | |
| SRR5643525 | five period of Gastrodia elata | 46.840 | |
| SRR5643528 | five period of Gastrodia elata | 50.600 | |
| SRR5643658 | five period of Gastrodia elata | 48.070 | |
| SRR5643659 | five period of Gastrodia elata | 34.240 | |
| SRR5643660 | five period of Gastrodia elata | 37.460 | |
| SRR5643661 | five period of Gastrodia elata | 33.530 | |
| SRR5643662 | five period of Gastrodia elata | 37.510 | |
| SRR5643663 | five period of Gastrodia elata | 40.190 | |
| SRR5643664 | five period of Gastrodia elata | 40.700 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 57.190 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 52.500 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 49.520 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 66.950 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 62.620 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 78.310 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 60.780 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 60.840 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 48.420 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 49.580 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 45.660 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 45.660 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 36.96 |
| Juven | Juvenile tuber | 70.19 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 42.90 | |
| Mother_Juven | Mother tuber of Juvenile | 81.75 |