Detail information of GWHGAAEX013997/evm.TU.scaffold_55.17
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2736 | 1.00E-139 | Presenilin |
| nr | gi|571453397|ref|XP_006579504.1| | 3.34E-158 | PREDICTED: presenilin-like protein At2g29900-like [Glycine max] |
| Swissprot | tr|Q9SIK7|PSNB_ARATH | 4.00E-140 | Presenilin-like protein At2g29900 |
| trEMBL | tr|A0A067KGG7|A0A067KGG7_JATCU | 4.00E-152 | Presenilin {ECO:0000256|RuleBase:RU361148} |
| TAIR | AT2G29900 | 1.00E-139 | Presenilin-2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000056 | 589427 | 591078 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013997
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01080.16 | Presenilin | 25 | 280 | 3.90E-70 |
| PF01080.16 | Presenilin | 291 | 384 | 6.50E-40 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K04505 | PSEN1, PS1 | Wnt signaling pathway | map04310 |
| Notch signaling pathway | map04330 | ||
| Neurotrophin signaling pathway | map04722 | ||
| Axon regeneration | map04361 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016485 | Biological Process | protein processing |
| GO:0004190 | Molecular Function | aspartic-type endopeptidase activity |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 32.270 |
| SRR2545915 | Juvenile tuber | 23.350 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 19.440 |
| SRR5643514 | five period of Gastrodia elata | 17.990 | |
| SRR5643515 | five period of Gastrodia elata | 15.800 | |
| SRR5643524 | five period of Gastrodia elata | 16.860 | |
| SRR5643525 | five period of Gastrodia elata | 31.690 | |
| SRR5643528 | five period of Gastrodia elata | 24.860 | |
| SRR5643658 | five period of Gastrodia elata | 39.140 | |
| SRR5643659 | five period of Gastrodia elata | 17.990 | |
| SRR5643660 | five period of Gastrodia elata | 20.630 | |
| SRR5643661 | five period of Gastrodia elata | 24.840 | |
| SRR5643662 | five period of Gastrodia elata | 24.050 | |
| SRR5643663 | five period of Gastrodia elata | 22.440 | |
| SRR5643664 | five period of Gastrodia elata | 19.230 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.370 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 26.380 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 20.230 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 17.170 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 16.610 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 16.410 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 17.880 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 18.090 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 19.040 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 16.280 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 22.270 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 22.270 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 22.87 |
| Juven | Juvenile tuber | 21.09 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 27.10 | |
| Mother_Juven | Mother tuber of Juvenile | 26.32 |