Gene detail

Detail information of GWHGAAEX014001/evm.TU.scaffold_55.24

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|530780068\|ref\|YP_008431873.1\|	1.00E-126	thermosome subunit [Thermofilum sp. 1910b]
KOG	KOG0360	0	Chaperonin complex component, TCP-1 alpha subunit (CCT1)
nr	gi\|743778262\|ref\|XP_010919587.1\|	0	PREDICTED: T-complex protein 1 subunit alpha-like [Elaeis guineensis]
Swissprot	tr\|P28769\|TCPA_ARATH	0	T-complex protein 1 subunit alpha {ECO:0000303\|PubMed:11599560}
trEMBL	tr\|M0RSR3\|M0RSR3_MUSAM	0	T-complex protein 1 subunit alpha {ECO:0000256\|RuleBase:RU004191}
TAIR	AT3G20050	0	T-complex protein 1 alpha subunit

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000056	865672	899589	-

Transcript Sequence
>GWHTAAEX014001 ATGGCAATACTAGCTCAGACGCCGGACATCCTCGGTGAGCGACAATCAGGCCAAGATGTTCGAACTCAAAATGTGCTCGCGTGCCAAGCGGTTGCCAACATTGTCAAGTCATCTCTCGGCCCTGTTGGGCTTGACAAGATGCTAGTTGATGATTATGGGGATGTCACTATTACTAATGATGGGGCTACAATACTCAAGATGCTTGAAGTGGAGCATCCAGCTGCCAAGGTTCTTGTAGAATTAGCAGAGCTTCAGGATCGTGAAGTTGGAGATGGAACAACTTCTATTGTTATCGTTGCTGCAGAATTGCTTAAGAGGGCAAATGATCTTGTAAGGAACAAGATTCATCCAACATCAATAATCAGTGGTTACAGACTTGCTATGAGGGAAGCATGTAAGTATGTTGATGAAAAACTTGCTGTTAAGGTTGAAAAGCTTGGAAAGGACTCTCTTGTAAACTGTGCCAAGACTAGCATGTCTTCAAAGCTTATTGGCACTGATAGTGACTTCTTTGCGAGTTTGGCTGTTGACGCTGTTCAAGCAGTAAAGACAACGAATGCAAGGGGAGAAGTGAAATATCCTATAAAGGGCATAAATATTTTGAAAGCTCATGGAAAAAGTGCCAAGGATAGCTACTTGCTGAATGGATATGCTTTGAATAGTGGACGTGCCGCTCTAGGTATGCCTAGTAGAGTTGCTCCAGCTAAAGTTGCTTGTCTTGATTTCAACCTGCAGAAGACAAAAATGCAAATGGGCGTTCAAATCTTGGTTTCTGATCCCAGGGAACTTGATAAAATACGACAAAGGGAATCCGATATTACCAAAGAACGTATTGAAAAAATTTTGAAGGCTGGAGCTAATGTTGTTCTTACAACAAAGGGTATTGATGATATGGCGCTAAAGGCAAGCTCTTCTCTTCCTGGTTATTATCTTTATTTTGTCGAGGCTGGGGCAATTGCTGTTAGGCGTATTCGGAAAGAGGACCTACGCCATATTGCCAAGGCTACTGGGGCAACTGTGGTTACGACATTTGCTGACATGGAAGGTGAAGAAACATTTGATCCGTCATTCCTTGGGCAGGCAGATGAAGTTTCTGAAGAGAAAATTGCTAATGATGATGCAATTATGATCAAAGGCACAAAAAACACAAGTGCAGTATCTTTGATTCTTAGAGGCGCAAATGACCTCATGCTTGATGAGATGGATAGGTCTTTGCATGATGCGTTATCCATTGTGAAGAGAACTCTTGAGTCAAATATGGTTGTTGCTGGTGGTGGTGCTGTTGAGGCTGCTTTGTCAGTGTACTTGGAGAACCTTGCTACAACCCTTGGCTCTAGGGAGCAGCTAGCAATAGCTGAGTTTGCTGAGTCTCTTCTTATTATACCCAAGGTACTTGCTGTTAATGCAGCAAAAGATGCCACTGAATTGGTAGCAAAACTACGTGCGTTTCACCATGCTGCCCAAACTAAAGCTGACAAGCAACATCTCTCCAGCATGGGATTGGACCTTTCAAAAGGTAGTATCCGTAATAATCTTGAGGCTGGAGTGATCGAACCGTCTATGAGCAAAGTGAAGATTTTACAGTTTGCTACCGAGGCAGCCATAACAATTCTGAGAATTGATGATATGATCAAGCTATTTAAAGATGAACAACAAGAGAGTGAAGACTAA

Network for GWHGAAEX014001

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00118.23	Cpn60_TCP1	31	545	9.00E-148

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006457	Biological Process	protein folding
GO:0051082	Molecular Function	unfolded protein binding
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	76.630
SRP064423	SRR2545915	Juvenile tuber	78.050
SRP108465	SRR5643513	five period of Gastrodia elata	59.840
	SRR5643514	five period of Gastrodia elata	61.030
	SRR5643515	five period of Gastrodia elata	59.300
	SRR5643524	five period of Gastrodia elata	61.840
	SRR5643525	five period of Gastrodia elata	55.920
	SRR5643528	five period of Gastrodia elata	74.810
	SRR5643658	five period of Gastrodia elata	64.140
	SRR5643659	five period of Gastrodia elata	71.470
	SRR5643660	five period of Gastrodia elata	72.610
	SRR5643661	five period of Gastrodia elata	65.770
	SRR5643662	five period of Gastrodia elata	64.660
	SRR5643663	five period of Gastrodia elata	69.070
	SRR5643664	five period of Gastrodia elata	64.660
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	67.520
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	54.130
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	76.060
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	61.800
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	62.720
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	55.810
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	64.930
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	66.340
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	88.360
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	72.260
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	90.080
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	90.080
SRP279888	Gastro	Gastrodia elata tuber	82.60
	Juven	Juvenile tuber	100.23
	Mother_Gastro	Mother tuber of Gastrodia elata	53.99
	Mother_Juven	Mother tuber of Juvenile	93.06