Detail information of GWHGAAEX014009/evm.TU.scaffold_55.34
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|374333758|ref|YP_005086886.1| | 7.00E-117 | tyramine oxidase [Pseudovibrio sp. FO-BEG1] |
| KOG | KOG1186 | 0 | Copper amine oxidase |
| nr | gi|672129693|ref|XP_008788360.1| | 0 | PREDICTED: primary amine oxidase-like [Phoenix dactylifera] |
| Swissprot | tr|Q8H1H9|AMO_ARATH | 0 | Primary amine oxidase (Precursor) |
| trEMBL | tr|F2CQF4|F2CQF4_HORVD | 0 | Predicted protein {ECO:0000313|EMBL:BAJ85075.1} |
| TAIR | AT4G12290 | 0 | Copper amine oxidase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000056 | 1164358 | 1179221 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014009
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02727.15 | Cu_amine_oxidN2 | 50 | 133 | 4.70E-17 |
| PF02728.15 | Cu_amine_oxidN3 | 142 | 242 | 1.50E-23 |
| PF01179.19 | Cu_amine_oxid | 262 | 679 | 3.30E-133 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009308 | Biological Process | amine metabolic process |
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0048038 | Molecular Function | quinone binding |
| GO:0008131 | Molecular Function | primary amine oxidase activity |
| GO:0005507 | Molecular Function | copper ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 77.930 |
| SRR2545915 | Juvenile tuber | 99.550 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 55.640 |
| SRR5643514 | five period of Gastrodia elata | 45.200 | |
| SRR5643515 | five period of Gastrodia elata | 55.970 | |
| SRR5643524 | five period of Gastrodia elata | 49.960 | |
| SRR5643525 | five period of Gastrodia elata | 157.180 | |
| SRR5643528 | five period of Gastrodia elata | 122.070 | |
| SRR5643658 | five period of Gastrodia elata | 175.560 | |
| SRR5643659 | five period of Gastrodia elata | 87.920 | |
| SRR5643660 | five period of Gastrodia elata | 117.500 | |
| SRR5643661 | five period of Gastrodia elata | 84.820 | |
| SRR5643662 | five period of Gastrodia elata | 56.810 | |
| SRR5643663 | five period of Gastrodia elata | 71.360 | |
| SRR5643664 | five period of Gastrodia elata | 86.740 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 71.570 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 41.670 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 46.600 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 82.500 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 64.240 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 57.800 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 79.550 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 46.560 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 39.460 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 37.990 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 32.230 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 32.230 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 52.85 |
| Juven | Juvenile tuber | 40.31 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 58.00 | |
| Mother_Juven | Mother tuber of Juvenile | 53.12 |