Detail information of GWHGAAEX014010/evm.TU.scaffold_55.35


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|258405873|ref|YP_003198615.1|4.00E-09RNP-1 like RNA-binding protein [Desulfohalobium retbaense DSM 5692]
KOGKOG01052.00E-78Alternative splicing factor ASF/SF2 (RRM superfamily)
nrgi|672175858|ref|XP_008807994.1|1.87E-109PREDICTED: serine/arginine-rich splicing factor SR34A-like isoform X2 [Phoenix dactylifera]
Swissprottr|A2RVS6|SR34A_ARATH6.00E-91Serine/arginine-rich splicing factor SR34A
trEMBLtr|M0RXH4|M0RXH4_MUSAM1.00E-106Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P06160_001}
TAIRAT1G091402.00E-78SERINE-ARGININE PROTEIN 30

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005611795101198203-
Transcript Sequence

Network for GWHGAAEX014010

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_1421082.20E-17
PF00076.21RRM_11472093.90E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12890SFRS1, ASF, SF2 Spliceosome map03040
IL-17 signaling pathwaymap04657

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms27.350
SRR2545915Juvenile tuber29.290
SRP108465SRR5643513five period of Gastrodia elata34.580
SRR5643514five period of Gastrodia elata34.600
SRR5643515five period of Gastrodia elata35.860
SRR5643524five period of Gastrodia elata34.720
SRR5643525five period of Gastrodia elata29.560
SRR5643528five period of Gastrodia elata25.340
SRR5643658five period of Gastrodia elata35.890
SRR5643659five period of Gastrodia elata33.900
SRR5643660five period of Gastrodia elata31.410
SRR5643661five period of Gastrodia elata35.660
SRR5643662five period of Gastrodia elata32.560
SRR5643663five period of Gastrodia elata32.920
SRR5643664five period of Gastrodia elata32.720
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_139.470
SRR6049655Rhizomagastrodiae_C368-T10_good_138.850
SRR6049656Rhizomagastrodiae_C368-T07_good_141.330
SRR6049657Rhizomagastrodiae_C368-T07_good_134.570
SRR6049658Rhizomagastrodiae_C368-T04_good_132.430
SRR6049659Rhizomagastrodiae_C368-T04_good_135.230
SRR6049660Rhizomagastrodiae_C368-T01_good_140.620
SRR6049661Rhizomagastrodiae_C368-T04_good_131.820
SRR6049662Rhizomagastrodiae_C368-T01_good_141.130
SRR6049663Rhizomagastrodiae_C368-T01_good_139.990
SRR6049664Rhizomagastrodiae_C368-T10_good_146.310
SRR6049665Rhizomagastrodiae_C368-T10_good_146.310
SRP279888GastroGastrodia elata tuber 34.68
JuvenJuvenile tuber29.35
Mother_GastroMother tuber of Gastrodia elata 30.96
Mother_JuvenMother tuber of Juvenile 27.22