Detail information of GWHGAAEX014016/evm.TU.scaffold_55.43
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672150521|ref|XP_008797346.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g14850-like [Phoenix dactylifera] |
| Swissprot | tr|Q0WSH6|PP312_ARATH | 0 | Pentatricopeptide repeat-containing protein At4g14850 |
| trEMBL | tr|K3ZN66|K3ZN66_SETIT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si028041m} |
| trEMBL | tr|K3ZN66|K3ZN66_SETIT | 4.00E-30 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si028041m} |
| TAIR | AT4G14850 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000056 | 1411153 | 1412934 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014016
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 225 | 274 | 4.40E-11 |
| PF01535.19 | PPR | 301 | 324 | 1.3 |
| PF14432.5 | DYW_deaminase | 399 | 523 | 3.70E-37 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.500 |
| SRR2545915 | Juvenile tuber | 2.810 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.750 |
| SRR5643514 | five period of Gastrodia elata | 7.200 | |
| SRR5643515 | five period of Gastrodia elata | 6.770 | |
| SRR5643524 | five period of Gastrodia elata | 5.940 | |
| SRR5643525 | five period of Gastrodia elata | 3.140 | |
| SRR5643528 | five period of Gastrodia elata | 3.020 | |
| SRR5643658 | five period of Gastrodia elata | 4.590 | |
| SRR5643659 | five period of Gastrodia elata | 9.180 | |
| SRR5643660 | five period of Gastrodia elata | 8.860 | |
| SRR5643661 | five period of Gastrodia elata | 8.700 | |
| SRR5643662 | five period of Gastrodia elata | 8.310 | |
| SRR5643663 | five period of Gastrodia elata | 8.680 | |
| SRR5643664 | five period of Gastrodia elata | 7.010 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.880 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.010 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.560 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.470 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.960 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.660 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.430 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.500 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.880 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.950 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.660 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.660 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 11.90 |
| Juven | Juvenile tuber | 16.62 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.82 | |
| Mother_Juven | Mother tuber of Juvenile | 13.68 |