Detail information of GWHGAAEX014019/evm.TU.scaffold_55.48


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG16741.00E-32Cyclin
nrgi|743778607|ref|XP_010919767.1|4.27E-38PREDICTED: cyclin-P4-1 [Elaeis guineensis]
Swissprottr|Q7XC35|CCP41_ORYSJ9.00E-37Cyclin-P4-1
trEMBLtr|I1I681|I1I681_BRADI3.00E-36Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI3G33590.1}
TAIRAT5G616501.00E-32CYCLIN P4;2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005615547291555722-
Transcript Sequence

Network for GWHGAAEX014019

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module5

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08613.10Cyclin291532.80E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0000079Biological Processregulation of cyclin-dependent protein serine/threonine kinase activity
GO:0019901Molecular Functionprotein kinase binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms6.390
SRR2545915Juvenile tuber15.980
SRP108465SRR5643513five period of Gastrodia elata22.590
SRR5643514five period of Gastrodia elata43.860
SRR5643515five period of Gastrodia elata26.250
SRR5643524five period of Gastrodia elata45.900
SRR5643525five period of Gastrodia elata2.390
SRR5643528five period of Gastrodia elata2.020
SRR5643658five period of Gastrodia elata1.300
SRR5643659five period of Gastrodia elata6.840
SRR5643660five period of Gastrodia elata4.000
SRR5643661five period of Gastrodia elata3.530
SRR5643662five period of Gastrodia elata3.480
SRR5643663five period of Gastrodia elata3.400
SRR5643664five period of Gastrodia elata0.910
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_17.730
SRR6049655Rhizomagastrodiae_C368-T10_good_18.360
SRR6049656Rhizomagastrodiae_C368-T07_good_19.770
SRR6049657Rhizomagastrodiae_C368-T07_good_110.190
SRR6049658Rhizomagastrodiae_C368-T04_good_17.200
SRR6049659Rhizomagastrodiae_C368-T04_good_14.600
SRR6049660Rhizomagastrodiae_C368-T01_good_114.840
SRR6049661Rhizomagastrodiae_C368-T04_good_19.960
SRR6049662Rhizomagastrodiae_C368-T01_good_128.980
SRR6049663Rhizomagastrodiae_C368-T01_good_122.630
SRR6049664Rhizomagastrodiae_C368-T10_good_113.700
SRR6049665Rhizomagastrodiae_C368-T10_good_113.700
SRP279888GastroGastrodia elata tuber 1.75
JuvenJuvenile tuber17.83
Mother_GastroMother tuber of Gastrodia elata 21.36
Mother_JuvenMother tuber of Juvenile 8.53