Detail information of GWHGAAEX014026/evm.TU.scaffold_55.64


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|557694900|ref|YP_008797954.1|7.00E-1226S proteasome regulatory subunit N11-like protein [Candidatus Caldiarchaeum subterraneum]
KOGKOG15540COP9 signalosome, subunit CSN5
nrgi|743811878|ref|XP_010929274.1|0PREDICTED: COP9 signalosome complex subunit 5b-like isoform X1 [Elaeis guineensis]
Swissprottr|Q8LAZ7|CSN5B_ARATH0COP9 signalosome complex subunit 5b
trEMBLtr|M0RFP1|M0RFP1_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P05640_001}
TAIRAT1G229200COP9 signalosome 5A

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005623594412363974-
Transcript Sequence

Network for GWHGAAEX014026

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01398.20JAB561672.00E-34
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyJAMM

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms19.780
SRR2545915Juvenile tuber19.950
SRP108465SRR5643513five period of Gastrodia elata36.260
SRR5643514five period of Gastrodia elata39.740
SRR5643515five period of Gastrodia elata35.430
SRR5643524five period of Gastrodia elata42.280
SRR5643525five period of Gastrodia elata31.990
SRR5643528five period of Gastrodia elata26.450
SRR5643658five period of Gastrodia elata31.130
SRR5643659five period of Gastrodia elata27.060
SRR5643660five period of Gastrodia elata27.150
SRR5643661five period of Gastrodia elata24.390
SRR5643662five period of Gastrodia elata29.910
SRR5643663five period of Gastrodia elata26.450
SRR5643664five period of Gastrodia elata27.530
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_130.280
SRR6049655Rhizomagastrodiae_C368-T10_good_119.810
SRR6049656Rhizomagastrodiae_C368-T07_good_137.060
SRR6049657Rhizomagastrodiae_C368-T07_good_125.240
SRR6049658Rhizomagastrodiae_C368-T04_good_128.700
SRR6049659Rhizomagastrodiae_C368-T04_good_128.360
SRR6049660Rhizomagastrodiae_C368-T01_good_128.890
SRR6049661Rhizomagastrodiae_C368-T04_good_127.790
SRR6049662Rhizomagastrodiae_C368-T01_good_146.560
SRR6049663Rhizomagastrodiae_C368-T01_good_139.790
SRR6049664Rhizomagastrodiae_C368-T10_good_149.660
SRR6049665Rhizomagastrodiae_C368-T10_good_149.660
SRP279888GastroGastrodia elata tuber 35.65
JuvenJuvenile tuber35.29
Mother_GastroMother tuber of Gastrodia elata 36.91
Mother_JuvenMother tuber of Juvenile 31.76