Gene detail

Detail information of GWHGAAEX014042/evm.TU.scaffold_55.113

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|392402696\|ref\|YP_006439308.1\|	2.00E-23	putative transcriptional regulator, Crp/Fnr family [Turneriella parva DSM 21527]
KOG	KOG0498	0	K+-channel ERG and related proteins, contain PAS/PAC sensor domain
nr	gi\|672106996\|ref\|XP_008788856.1\|	0	PREDICTED: cyclic nucleotide-gated ion channel 1 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|O65717\|CNGC1_ARATH	0	Cyclic nucleotide-gated ion channel 1
trEMBL	tr\|M0T997\|M0T997_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P22490_001}
TAIR	AT5G53130	0	cyclic nucleotide gated channel 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000056	4962616	5034204	+

Transcript Sequence
>GWHTAAEX014042 TGCTGACAAGACTTCAGCACTTTCGCAGAACTTCACCTCTCAATAAGAACTTATCGATTACTCTTCCTCTTCCACTCGACTAAAGACTAAGGTCTCTTTTTTTCCCGTTGTATCTCCTGCGACGTCTCTTCCCTTCTCATCCTCTTCGGCTTTGGTTTTCTATCCTTCGAAATGAATATCAGGAATTAACGTTTTGCGCGATTTGGCCTTTTTCTTCACTTTTTGTGGGATTATCTTACTTGCTTGGAGCAGCGAGCAGTGCAGGCCGAAGTGGAACAGCGATAAGCATCTTGAAGGCTATGCAATCTTATCTCTTGGGACACCTCTTACTCTTCCCTTCGGCATAGGTTCTCTATTTTGTAAATCGTTAAATCCTCCAAAACCAAGGGATTGCTTCGCACAGGCTGGGCATGGAAGCACCAAGACAGTTCTCATTTAACTAAGTATGGTGAAATATTGTCATTTTTAATGCTTGAAAGTTTGTATGTATTTAGACAACATTTGAATAAATGAATCACCGGGAAGAGAGATTTGTGAGCTTGCGCAGGATTCAAGACTTAAACTCTGAGAGAGCTGTGGTTGCTGGTAGGGCGTTTTTGTGTGGGCAAAGAAAACGATTCAGTTGGACAGTGAATATCTTTCAAAGGTTATTACAGACTATACATGAAGCAACATGTAGTATTTTTTTTGACAATTCTATGAAAGATTTACCACTAGAAGGACAATTGTCAAGGAAAAAAGTACTTGATCCTCAAGGAACATTTCTTCAAAGATGGAACAAAATATTTGTCCTTTCATGTGTGCTTGCAGTATCTGTGGATCCCCTATTCTTTTACATCCCAATAGTAGATGATAGTAATAATTGCCTTGATATGGATAAAAAGTTAGAAATCACTGTAAGCGTGTTGCGCTCTTTCACAGATATTTTTTATGTACTACATATCATTCTCCAATTTAGAACTGGTTTTATTGCTCCTTCATCTCGAGTTTTTGGAAGAGGTGTTTTGGTTGAAGATTCTTTTGCAATAGCAAGAAGATATTTGTTGTCAAACTTCCTTGTTGATGTACTTTCTGTGCTTCCTCTTCCACAGATAGTTGTACTGATCATAGTACCAAGATTAAAAGAGACATCTCCATGGGATGCAAAAAACTTATTGACGATTATTGTCTTATTCCAGTATGTCCCTAGACTAATAAGGATCATACCCTTGTATATGGAAGTAACTAGATCTGCTGGCATAATCACTGAAACAGCTTGGGCTGGAGCTGCCTTCAACTTGTTGCTTTACATGCTTGCAAGTCATATGCTTGGAGCATTCTGGTACTTGCTTTCAATTCAACGTGTGGATGCATGCTGGAGACATGCTTGTTCCATAAATAATTGTAAGATTACCTCCTGGTATTGTCGAAAAGAGAATGGCCAAGACAATGGCTTTGTAATTGATGCATGCCCCATTCAAAATTCCAACAGTTCAGTTTTTGACTTTGGAATCTATCTATCAGCTCTTCAAAATATTGTTCAGACGGAAAATTTTCCACAGAAATTCATTTACTGCTTTTGGTGGGGGTTACAGAATCTGAGTTCTCTCGGGCAAAATCTAAACACAAGTACTTATGCATGGGAGGTTCTCTATGCTGTTTTTGTTTCTGTCTCAGGCTTGGTACTTTTTTCACTTCTTATCGGCAATATGCAGACTTACCTTCAGTCCACCACCGTAAGAATAGAAGAAATGAGAGTAAAAAGGCGGGATTCAGAGCAATGGATGTATCATCGATTACTTCCGGAGAGTTTGAGGGATAGAATCCGTCGGTATGAGCAGTACAGATGGCAAGAGACTAGAGGTGTAGATGAAGAGAGCCTACTTCGAAATCTCCCTAAAGACCTTAGAAGAGACATCAAGCGACACTTCTGTTTGGCTTTGCTTATGCGGGTTCCGATGTTTGAAAAGATGGATGATCAGCTGATGGATGCCATGTGCGATTGCTTGAAACCCGCTCTGTACACCGAGGAGAGCTGCATTGTACGCGAAGGTGATCCTGTTGATGAAATGCTCTTCATCATGAGAGGAAAGCTGCTCAGCGTGACCACAAATGGGGGTAGAACTGGTTTCTTCAACTCTGATTACCTCAAAGGAGGTGACTTCTGCGGGGAAGAGCTTCTCACTTGGGCTCTGGATCCCCAATCATCCACTAGCCTTCCGATCTCGACAAGGACAGTCAAGGCATTATCAGAAGTCGAAGGCTTCGCCCTCTCTGCTGATGATCTGAAATTTGTTGCTGCCCAATTCCGAAGGCTGCACAGCAAGCAGCTCAGGCACACGTTCAGGTTCTATTCACAACAATGGAGAACGTGGGCTGCCTGCTTCATTCAGGCGGCTTGGCGCCGTTACTCGAGAAAGAAGCTTGAAGAATCCCTTCGAGAAGAGGAGGACAGGCTGCAGGCTGCGCTTGTGAAAGAAAACAGCAGCACACCCAGCCTCGGCGCGACGATCTACGCCTCGAGGTTCGCTCTGAATGCTCTGCGCGCCCTGAGACGGAATGCGACGCGGAAGAGCCGGATACAGGATCGGCTGCCGGTGATACTGTTGCAGAAGCCCTCCGAGCCCGATTTCACCTCCGAGGAAAGTTAGCGGGAGTCCGTAGCTTTTGTAAGTGGTTTTGATTTGTGATCCCCACAAAGCTTGCATATATTTTGCTGTGACTTATTGATTCTACTTTTATTATGTATTGTTATTGTTTAAGCACCCACATTTTTTTATGACATTACCTTTTTTGTCCTATGGTGATTCTGCTGTATAATACATTAAACAGAAGGGAACTCATTTATAAGTTCCATCTGTTTTTTTTTTTTTCAATGTATTTGGAAATGGCATAATTGATGTTGACCATGTTTGAATGTAGCTAAAATGATAATGTGGATGTTATGCTAGC

Network for GWHGAAEX014042

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00520.30	Ion_trans	88	404	2.20E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05391	CNGC	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0006811	Biological Process	ion transport
GO:0005216	Molecular Function	ion channel activity
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	34.700
SRP064423	SRR2545915	Juvenile tuber	42.830
SRP108465	SRR5643513	five period of Gastrodia elata	30.500
	SRR5643514	five period of Gastrodia elata	43.070
	SRR5643515	five period of Gastrodia elata	37.080
	SRR5643524	five period of Gastrodia elata	43.830
	SRR5643525	five period of Gastrodia elata	53.320
	SRR5643528	five period of Gastrodia elata	64.970
	SRR5643658	five period of Gastrodia elata	51.310
	SRR5643659	five period of Gastrodia elata	29.900
	SRR5643660	five period of Gastrodia elata	36.970
	SRR5643661	five period of Gastrodia elata	30.140
	SRR5643662	five period of Gastrodia elata	30.260
	SRR5643663	five period of Gastrodia elata	27.400
	SRR5643664	five period of Gastrodia elata	30.920
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	45.530
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	43.280
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	49.420
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	47.660
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	48.490
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	54.580
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	49.680
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	48.210
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	38.870
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	41.960
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	41.690
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	41.690
SRP279888	Gastro	Gastrodia elata tuber	34.79
	Juven	Juvenile tuber	39.75
	Mother_Gastro	Mother tuber of Gastrodia elata	57.84
	Mother_Juven	Mother tuber of Juvenile	62.88