Gene detail

Detail information of GWHGAAEX014043/evm.TU.scaffold_55.115

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|427737935\|ref\|YP_007057479.1\|	7.00E-30	50S ribosomal protein L11 methylase [Rivularia sp. PCC 7116]
KOG	KOG1499	0	Protein arginine N-methyltransferase PRMT1 and related enzymes
nr	gi\|743756745\|ref\|XP_010918460.1\|	0	PREDICTED: probable protein arginine N-methyltransferase 1 [Elaeis guineensis]
Swissprot	tr\|Q0J2C6\|ANM1_ORYSJ	0	Probable protein arginine N-methyltransferase 1
trEMBL	tr\|F2Q6G5\|F2Q6G5_MUSAC	0	Putative uncharacterized protein PRMT1 {ECO:0000313\|EMBL:ACE82047.1}
TAIR	AT4G29510	0	arginine methyltransferase 11

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000056	5116686	5144319	-

Transcript Sequence
>GWHTAAEX014043 GTGAAGTGATCTGAAGTTTCGTCGCCTTCCGCTGGAGAGAATCGACGAAAAGCCGGTTTTAGGGTTTAGTTTTCTCCCAGTGCAAGCTTTCGTTTATCTATTTCCCTTTATCGTCCTCGTAATGGGCAGGCGAAAGGGCGGGAATAAATCTCCCGCGTCATTCAGCGAAAAGAGCAGCTATAAGAATGGCTATCTAGTCGCAGACGCTGTTGCTGGCAGCGTCGATAGTTATGATGTGAGCGCAGCGGAGGAGAGGACGGAAAGCTCCAATCTTGAGGACCCGTCAGAGGTCGAAGCCTTAGTCGGAAGCGATAAAACCAGCGCCGATTATTACTTTGACTCTTACTCGCACTTCGGCATTCATGAAGAAATGTTGAAGGATGTTGTTCGTACCAAAACTTACCAAAATGTTATTTATCAAAACTCTTTTATTTTTAAGAACAAAGTGGTACTTGATGTTGGTGCAGGGACAGGAATTTTGTCCCTTTTCTGTGCAAAAGCAGGAGCTAAGCATGTATATGCGGTAGAATGCTCTTTAATGGCTGACATGGCAATGGAGATTGTTCAAGCAAATGGATTATCTGATGTGATAACTGTTCTAAAGGGAAAAATTGAAGAAATTGAGTTACCAGTCGCCCATGTTGACGTTATCATTTCTGAATGGATGGGCTATTTTTTGTTGTTTGAGAACATGTTAAACACAGTTTTATATGCACGCAACAAATGGCTTATAAATGATGGAATCATTCTACCCGACAAAACTTCTTTGTACTTGACAGCAATTGAGGATGCTGAATACAAAGAGGACAAGATCGAATTTTGGAACAACGTTTATGGCTTTGACATGAGTTGCATCAAGAAGCAAGCTATGATGGAGCCTCTTGTTGATACGGTCGACCAGAATCAGATAGTCACAAACTGCTTGTTGCTGAAGACCATGGACATATCAAAGATGGATGCTGGTGATGTCTCCTTTACAGTACCTTTCAAACTTGTGGCAGAACGCAATGATTTTATACACGCTCTTGTGGCATATTTTGATGTAACGTTTACAAAATGTCACAAGTTAATGGGATTTTCAACTGGGCCTCGATCGAAGACCACCCACTGGAAGCAAACAGTTCTATACCTGGAGGATGTGCTGACCATCTGCGAGGGAGAAGCTCTTGTAGGGAATATGTCTGTGGAGCCAAACAAGAAAAATCCCCGAGATATCGATATAATGCTCAAGTATTCCTTGAATGGACGGCGCTGTCAGGTATCCAGAACTCAATACTACAAGATGAGATGAAACCATGTAAGCGTTTTTACCCTAGCAATGAACTGTACTGTTTGCCTTTCTTTCCATCTCCAATTGCGTTGCCATTTATGAGCAACCTCTTCAGGGATCTGCTGCTAATTTTTGTTTGTAAAAGTAAAATCCATTGCTGCAGTTTCATTTATTTTTATTGAAAATCTACTTGATTAGTGAGCCAGCATGATTGTTCTGTGATCATTTATTGCTTGTTGAATTAAAAAAATAAAGAAAATCTGTATATTATGGTTACAAAGC

Network for GWHGAAEX014043

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06325.12	PrmA	105	209	2.10E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11434	PRMT1	FoxO signaling pathway	map04068
K11434	PRMT1	Glucagon signaling pathway	map04922

Gene Ontology

GO term	Ontology	Name
GO:0006479	Biological Process	protein methylation
GO:0008168	Molecular Function	methyltransferase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	48.810
SRP064423	SRR2545915	Juvenile tuber	62.690
SRP108465	SRR5643513	five period of Gastrodia elata	52.820
	SRR5643514	five period of Gastrodia elata	57.000
	SRR5643515	five period of Gastrodia elata	47.130
	SRR5643524	five period of Gastrodia elata	54.240
	SRR5643525	five period of Gastrodia elata	38.070
	SRR5643528	five period of Gastrodia elata	39.010
	SRR5643658	five period of Gastrodia elata	36.810
	SRR5643659	five period of Gastrodia elata	53.200
	SRR5643660	five period of Gastrodia elata	55.990
	SRR5643661	five period of Gastrodia elata	50.100
	SRR5643662	five period of Gastrodia elata	56.370
	SRR5643663	five period of Gastrodia elata	53.520
	SRR5643664	five period of Gastrodia elata	48.810
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	46.420
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	68.330
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	56.290
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	44.620
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	36.350
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	37.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	44.480
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	39.640
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	62.690
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	56.630
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	62.180
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	62.180
SRP279888	Gastro	Gastrodia elata tuber	66.94
	Juven	Juvenile tuber	72.07
	Mother_Gastro	Mother tuber of Gastrodia elata	24.64
	Mother_Juven	Mother tuber of Juvenile	34.71