Detail information of GWHGAAEX014049/evm.TU.scaffold_559.2
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0014 | 7.00E-08 | MADS box transcription factor |
| nr | gi|566150328|ref|XP_002298260.2| | 1.86E-09 | hypothetical protein POPTR_0001s22220g [Populus trichocarpa] |
| Swissprot | tr|Q7XJK6|AGL36_ARATH | 7.00E-06 | Agamous-like MADS-box protein AGL36 |
| trEMBL | tr|B9GHL0|B9GHL0_POPTR | 7.00E-10 | Uncharacterized protein {ECO:0000313|EMBL:EEE83065.2} |
| TAIR | AT1G69540 | 7.00E-08 | AGAMOUS-like 94 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000551 | 30740 | 31859 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014049
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00319.17 | SRF-TF | 12 | 58 | 5.30E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MADS-M-type |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding |
| GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.820 |
| SRR2545915 | Juvenile tuber | 0.920 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.400 |
| SRR5643514 | five period of Gastrodia elata | 3.500 | |
| SRR5643515 | five period of Gastrodia elata | 2.910 | |
| SRR5643524 | five period of Gastrodia elata | 2.060 | |
| SRR5643525 | five period of Gastrodia elata | 2.990 | |
| SRR5643528 | five period of Gastrodia elata | 3.230 | |
| SRR5643658 | five period of Gastrodia elata | 6.470 | |
| SRR5643659 | five period of Gastrodia elata | 1.590 | |
| SRR5643660 | five period of Gastrodia elata | 1.880 | |
| SRR5643661 | five period of Gastrodia elata | 1.630 | |
| SRR5643662 | five period of Gastrodia elata | 4.110 | |
| SRR5643663 | five period of Gastrodia elata | 1.650 | |
| SRR5643664 | five period of Gastrodia elata | 3.160 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.240 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.790 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.850 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.880 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.070 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.080 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.290 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.570 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.270 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.160 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.430 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.430 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.27 |
| Juven | Juvenile tuber | 3.32 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.68 | |
| Mother_Juven | Mother tuber of Juvenile | 0.87 |