Detail information of GWHGAAEX014060/evm.TU.scaffold_56.22
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|434406671|ref|YP_007149556.1| | 2.00E-16 | SufE protein probably involved in Fe-S center assembly [Cylindrospermum stagnale PCC 7417] |
| nr | gi|672139861|ref|XP_008793728.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: quinolinate synthase, chloroplastic [Phoenix dactylifera] |
| Swissprot | tr|Q9FGS4|NADA_ARATH | 0 | Quinolinate synthase, chloroplastic (Precursor) |
| trEMBL | tr|A0A059A5U0|A0A059A5U0_EUCGR | 0 | Uncharacterized protein {ECO:0000313|EMBL:KCW49203.1} |
| TAIR | AT5G50210 | 0 | quinolinate synthase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000066 | 1564756 | 1574620 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014060
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02657.14 | SufE | 78 | 198 | 2.40E-25 |
| PF02445.15 | NadA | 253 | 559 | 1.20E-32 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03517 | nadA | Metabolic pathways | map01100 |
| Nicotinate and nicotinamide metabolism | map00760 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009435 | Biological Process | NAD biosynthetic process |
| GO:0008987 | Molecular Function | quinolinate synthetase A activity |
| GO:0051539 | Molecular Function | 4 iron, 4 sulfur cluster binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.400 |
| SRR2545915 | Juvenile tuber | 2.800 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.850 |
| SRR5643514 | five period of Gastrodia elata | 4.210 | |
| SRR5643515 | five period of Gastrodia elata | 5.270 | |
| SRR5643524 | five period of Gastrodia elata | 4.080 | |
| SRR5643525 | five period of Gastrodia elata | 24.290 | |
| SRR5643528 | five period of Gastrodia elata | 35.470 | |
| SRR5643658 | five period of Gastrodia elata | 20.140 | |
| SRR5643659 | five period of Gastrodia elata | 9.520 | |
| SRR5643660 | five period of Gastrodia elata | 9.850 | |
| SRR5643661 | five period of Gastrodia elata | 10.710 | |
| SRR5643662 | five period of Gastrodia elata | 12.350 | |
| SRR5643663 | five period of Gastrodia elata | 9.280 | |
| SRR5643664 | five period of Gastrodia elata | 10.550 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.740 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.650 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.740 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.200 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.680 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.130 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.860 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.100 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.410 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.040 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.580 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.580 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 16.18 |
| Juven | Juvenile tuber | 5.29 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 19.70 | |
| Mother_Juven | Mother tuber of Juvenile | 7.65 |