Detail information of GWHGAAEX014066/evm.TU.scaffold_56.30


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG03043.00E-06mRNA deadenylase subunit
nrgi|643727850|gb|KDP36143.1|1.23E-07hypothetical protein JCGZ_08787 [Jatropha curcas]
Swissprottr|Q9LEU4|CAF1J_ARATH3.00E-06Probable CCR4-associated factor 1 homolog 10
trEMBLtr|M0T8E4|M0T8E4_MUSAM2.00E-11Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P19460_001}
TAIR72946343.00E-06Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006619198681920521-
Transcript Sequence

Network for GWHGAAEX014066

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12581CNOT7_8, CAF1, POP2 RNA degradation map03018

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms3.840
SRR2545915Juvenile tuber4.340
SRP108465SRR5643513five period of Gastrodia elata2.310
SRR5643514five period of Gastrodia elata5.550
SRR5643515five period of Gastrodia elata1.830
SRR5643524five period of Gastrodia elata1.590
SRR5643525five period of Gastrodia elata2.680
SRR5643528five period of Gastrodia elata1.350
SRR5643658five period of Gastrodia elata5.100
SRR5643659five period of Gastrodia elata4.480
SRR5643660five period of Gastrodia elata4.980
SRR5643661five period of Gastrodia elata2.650
SRR5643662five period of Gastrodia elata3.310
SRR5643663five period of Gastrodia elata4.240
SRR5643664five period of Gastrodia elata3.540
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_10.740
SRR6049655Rhizomagastrodiae_C368-T10_good_13.820
SRR6049656Rhizomagastrodiae_C368-T07_good_10.940
SRR6049657Rhizomagastrodiae_C368-T07_good_13.620
SRR6049658Rhizomagastrodiae_C368-T04_good_12.020
SRR6049659Rhizomagastrodiae_C368-T04_good_13.560
SRR6049660Rhizomagastrodiae_C368-T01_good_12.700
SRR6049661Rhizomagastrodiae_C368-T04_good_13.300
SRR6049662Rhizomagastrodiae_C368-T01_good_13.320
SRR6049663Rhizomagastrodiae_C368-T01_good_15.700
SRR6049664Rhizomagastrodiae_C368-T10_good_12.590
SRR6049665Rhizomagastrodiae_C368-T10_good_12.590
SRP279888GastroGastrodia elata tuber 2.32
JuvenJuvenile tuber1.29
Mother_GastroMother tuber of Gastrodia elata 1.92
Mother_JuvenMother tuber of Juvenile 0.80