Detail information of GWHGAAEX014068/evm.TU.scaffold_56.33
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3238 | 8.00E-78 | Chloride ion current inducer protein |
| nr | gi|743881856|ref|XP_010909011.1| | 4.55E-102 | PREDICTED: chloride conductance regulatory protein ICln [Elaeis guineensis] |
| Swissprot | tr|Q9LVA7|ICLN_ARATH | 2.00E-78 | Chloride conductance regulatory protein ICln |
| trEMBL | tr|B9I4K9|B9I4K9_POPTR | 1.00E-96 | Nucleotide-sensitive chloride conductance regulator family protein {ECO:0000313|EMBL:EEE96499.1} |
| TAIR | AT5G62290 | 8.00E-78 | nucleotide-sensitive chloride conductance regulator (ICln) family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000066 | 1990946 | 2051919 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014068
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03517.12 | Voldacs | 49 | 170 | 3.20E-27 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K05019 | CLNS1A | RNA transport | map03013 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006821 | Biological Process | chloride transport |
| GO:0006884 | Biological Process | cell volume homeostasis |
| GO:0000387 | Biological Process | spliceosomal snRNP assembly |
| GO:0005829 | Cellular Component | cytosol |
| GO:0005886 | Cellular Component | plasma membrane |
| GO:0034709 | Cellular Component | methylosome |
| GO:0034715 | Cellular Component | pICln-Sm protein complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 42.220 |
| SRR2545915 | Juvenile tuber | 45.520 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 37.970 |
| SRR5643514 | five period of Gastrodia elata | 42.250 | |
| SRR5643515 | five period of Gastrodia elata | 36.970 | |
| SRR5643524 | five period of Gastrodia elata | 40.030 | |
| SRR5643525 | five period of Gastrodia elata | 50.500 | |
| SRR5643528 | five period of Gastrodia elata | 53.050 | |
| SRR5643658 | five period of Gastrodia elata | 41.780 | |
| SRR5643659 | five period of Gastrodia elata | 34.040 | |
| SRR5643660 | five period of Gastrodia elata | 39.130 | |
| SRR5643661 | five period of Gastrodia elata | 38.550 | |
| SRR5643662 | five period of Gastrodia elata | 35.490 | |
| SRR5643663 | five period of Gastrodia elata | 39.180 | |
| SRR5643664 | five period of Gastrodia elata | 35.200 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 38.820 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 43.580 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 47.050 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 41.710 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 46.490 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 41.940 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 42.230 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 50.810 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 60.370 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 52.800 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 53.710 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 53.710 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 59.88 |
| Juven | Juvenile tuber | 50.20 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 69.18 | |
| Mother_Juven | Mother tuber of Juvenile | 63.40 |